Source Name Characteristics [GeneticModification] Characteristics [Genotype] Characteristics [Organism] Term Source REF Characteristics [StrainOrLine] Protocol REF Parameter Value [volume] Parameter Value [agitation] Parameter Value [seeding] Parameter Value [temperature] Parameter Value [medium] Parameter Value [aeration] Parameter Value [time] Sample Name Protocol REF Extract Name Material Type Protocol REF Parameter Value [flourescence label] Parameter Value [labelled extract yield] Parameter Value [DNA quantitiy] Parameter Value [DNA quantity] Parameter Value [fluorescent label] Labeled Extract Name Label Material Type Term Source REF Protocol REF Parameter Value [Wash A temperature] Parameter Value [Wash A time] Parameter Value [hybridization volume] Parameter Value [hybridization time] Parameter Value [Wash B time 1] Parameter Value [Wash B temperature] Parameter Value [hybridization temperature] Parameter Value [Wash B time 2] Protocol REF Hybridization Name Array Design REF Term Source REF Protocol REF Factor Value [strain_or_line] Factor Value [Genotype] Scan Name Array Data File Comment [ArrayExpress FTP file] Derived Array Data Matrix File Comment [Derived ArrayExpress FTP file] Helicobacter pylori hp0906KO gene_knock_out hp0906KO- Helicobacter pylori ncbitax CCUG17874 P-MTAB-21571 12 100 rpm 1 37 BHI + 5%FBS see protocol 20 hp0906KO culture (C) P-MTAB-21572 hp0906KO total RNA (C) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 Cy5 4 4 Cy5 hp0906KO (C1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 65 2 45 20 2 22 65 2 P-MTAB-21578 Hyb:32525 A-BUGS-18 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 CCUG17874 hp0906KO- bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:32793 MBAD_32063.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.raw.1.zip E-BUGS-78-processed-data-1757476352.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.processed.1.zip Helicobacter pylori CCUG17874 wild type Helicobacter pylori ncbitax CCUG17874 P-MTAB-21571 12 100 rpm 1 37 BHI + 5%FBS see protocol 20 CCUG17874 culture (A) P-MTAB-21573 CCUG17874 gDNA (A) genomic_DNA P-MTAB-21575 5 5 Cy3 Cy3 CCUG17874 (A3) Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 65 2 45 20 2 22 65 2 P-MTAB-21578 Hyb:32525 A-BUGS-18 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 CCUG17874 wild type bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:32793 MBAD_32062.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.raw.1.zip E-BUGS-78-processed-data-1757476352.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.processed.1.zip Helicobacter pylori CCUG17874 reference gDNA wild type Helicobacter pylori ncbitax CCUG17874 P-MTAB-21571 12 100 rpm 1 37 BHI + 5%FBS see protocol 20 CCUG17874 culture (A)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23767 P-MTAB-21573 CCUG17874 gDNA (A)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768 genomic_DNA P-MTAB-21575 5 5 Cy3 Cy3 CCUG17874 (A3)__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:23856 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 65 2 45 20 2 22 65 2 P-MTAB-21578 Hyb:32519 A-BUGS-18 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 CCUG17874 wild type bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:32719 MBAD_32084.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.raw.1.zip E-BUGS-78-processed-data-1757476218.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.processed.1.zip Helicobacter pylori CCUG17874__bugs.sgul.ac.uk:BuG@Sbase/BioSource:23811 wild type Helicobacter pylori ncbitax CCUG17874 P-MTAB-21571 12 100 rpm 1 37 BHI + 5%FBS see protocol 20 CCUG17874 culture (C) P-MTAB-21572 CCUG17874 total RNA (C) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 Cy5 4 4 Cy5 CCUG17874 (C1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 65 2 45 20 2 22 65 2 P-MTAB-21578 Hyb:32519 A-BUGS-18 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 CCUG17874 wild type bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:32719 MBAD_32085.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.raw.1.zip E-BUGS-78-processed-data-1757476218.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.processed.1.zip Helicobacter pylori hp0906KO gene_knock_out hp0906KO- Helicobacter pylori ncbitax CCUG17874 P-MTAB-21571 12 100 rpm 1 37 BHI + 5%FBS see protocol 20 hp0906KO culture (B) P-MTAB-21572 hp0906KO total RNA (B) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 Cy5 4 4 Cy5 hp0906KO (B1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 65 2 45 20 2 22 65 2 P-MTAB-21578 Hyb:32524 A-BUGS-18 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 CCUG17874 hp0906KO- bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:32794 MBAD_32065.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.raw.1.zip E-BUGS-78-processed-data-1757476352.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.processed.1.zip Helicobacter pylori CCUG17874 wild type Helicobacter pylori ncbitax CCUG17874 P-MTAB-21571 12 100 rpm 1 37 BHI + 5%FBS see protocol 20 CCUG17874 culture (A) P-MTAB-21573 CCUG17874 gDNA (A) genomic_DNA P-MTAB-21575 5 5 Cy3 Cy3 CCUG17874 (A2) Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 65 2 45 20 2 22 65 2 P-MTAB-21578 Hyb:32524 A-BUGS-18 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 CCUG17874 wild type bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:32794 MBAD_32064.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.raw.1.zip E-BUGS-78-processed-data-1757476352.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.processed.1.zip Helicobacter pylori CCUG17874 wild type Helicobacter pylori ncbitax CCUG17874 P-MTAB-21571 12 100 rpm 1 37 BHI + 5%FBS see protocol 20 CCUG17874 culture (A) P-MTAB-21573 CCUG17874 gDNA (A) genomic_DNA P-MTAB-21575 5 5 Cy3 Cy3 CCUG17874 (A1) Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 65 2 45 20 2 22 65 2 P-MTAB-21578 Hyb:32523 A-BUGS-18 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 CCUG17874 wild type bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:32795 MBAD_32066.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.raw.1.zip DBAD_32795.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.processed.1.zip Helicobacter pylori hp0906KO gene_knock_out hp0906KO- Helicobacter pylori ncbitax CCUG17874 P-MTAB-21571 12 100 rpm 1 37 BHI + 5%FBS see protocol 20 hp0906KO culture (A) P-MTAB-21572 hp0906KO total RNA (A) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 Cy5 4 4 Cy5 hp0906KO (A1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 65 2 45 20 2 22 65 2 P-MTAB-21578 Hyb:32523 A-BUGS-18 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 CCUG17874 hp0906KO- bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:32795 MBAD_32067.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.raw.1.zip DBAD_32795.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.processed.1.zip Helicobacter pylori CCUG17874__bugs.sgul.ac.uk:BuG@Sbase/BioSource:23770 wild type Helicobacter pylori ncbitax CCUG17874 P-MTAB-21571 12 100 rpm 1 37 BHI + 5%FBS see protocol 20 CCUG17874 culture (B) P-MTAB-21573 CCUG17874 gDNA (B) genomic_DNA P-MTAB-21575 5 5 Cy5 Cy5 CCUG17874 (B1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 65 2 45 20 2 22 65 2 P-MTAB-21579 Hyb:32528 A-BUGS-18 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 CCUG17874 wild type bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:32789 MBAD_32075.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.raw.1.zip DBAD_32789.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.processed.1.zip Helicobacter pylori NCTC26695 wild type Helicobacter pylori ncbitax NCTC26695 P-MTAB-21571 12 100 rpm 1 37 BHI + 5%FBS see protocol 20 NCTC26695 culture (B) P-MTAB-21573 NCTC26695 gDNA (B) genomic_DNA P-MTAB-21576 5 5 Cy3 Cy3 NCTC26695 (B1) Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 65 2 45 20 2 22 65 2 P-MTAB-21579 Hyb:32528 A-BUGS-18 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 NCTC26695 wild type bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:32789 MBAD_32074.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.raw.1.zip DBAD_32789.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.processed.1.zip Helicobacter pylori CCUG17874 reference gDNA wild type Helicobacter pylori ncbitax CCUG17874 P-MTAB-21571 12 100 rpm 1 37 BHI + 5%FBS see protocol 20 CCUG17874 culture (A)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23767 P-MTAB-21573 CCUG17874 gDNA (A)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768 genomic_DNA P-MTAB-21575 5 5 Cy3 Cy3 CCUG17874 (A5) Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 65 2 45 20 2 22 65 2 P-MTAB-21578 Hyb:32521 A-BUGS-18 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 CCUG17874 wild type bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:32716 MBAD_32058.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.raw.1.zip E-BUGS-78-processed-data-1757476218.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.processed.1.zip Helicobacter pylori hp0958 KO gene_knock_out hp0958KO- Helicobacter pylori ncbitax CCUG17874 P-MTAB-21571 12 100 rpm 1 37 BHI + 5%FBS see protocol 20 hp0958 KO culture (B) P-MTAB-21572 hp0958 KO total RNA (B) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 Cy5 4 4 Cy5 hp0958 KO (B1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 65 2 45 20 2 22 65 2 P-MTAB-21578 Hyb:32521 A-BUGS-18 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 CCUG17874 hp0958KO- bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:32716 MBAD_32059.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.raw.1.zip E-BUGS-78-processed-data-1757476218.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.processed.1.zip Helicobacter pylori NCTC26695 wild type Helicobacter pylori ncbitax NCTC26695 P-MTAB-21571 12 100 rpm 1 37 BHI + 5%FBS see protocol 20 NCTC26695 culture (A) P-MTAB-21573 NCTC26695 gDNA (A) genomic_DNA P-MTAB-21576 5 5 Cy3 Cy3 NCTC26695 (A1) Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 65 2 45 20 2 22 65 2 P-MTAB-21579 Hyb:32526 A-BUGS-18 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 NCTC26695 wild type bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:32788 MBAD_32070.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.raw.1.zip DBAD_32788.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.processed.1.zip Helicobacter pylori CCUG17874__bugs.sgul.ac.uk:BuG@Sbase/BioSource:23770 wild type Helicobacter pylori ncbitax CCUG17874 P-MTAB-21571 12 100 rpm 1 37 BHI + 5%FBS see protocol 20 CCUG17874 culture (A)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23771 P-MTAB-21573 CCUG17874 gDNA (A)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23772 genomic_DNA P-MTAB-21575 5 5 Cy5 Cy5 CCUG17874 (A1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 65 2 45 20 2 22 65 2 P-MTAB-21579 Hyb:32526 A-BUGS-18 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 CCUG17874 wild type bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:32788 MBAD_32071.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.raw.1.zip DBAD_32788.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.processed.1.zip Helicobacter pylori hp0958 KO gene_knock_out hp0958KO- Helicobacter pylori ncbitax CCUG17874 P-MTAB-21571 12 100 rpm 1 37 BHI + 5%FBS see protocol 20 hp0958 KO culture (A) P-MTAB-21572 hp0958 KO total RNA (A) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 Cy5 4 4 Cy5 hp0958 KO (A1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 65 2 45 20 2 22 65 2 P-MTAB-21578 Hyb:32520 A-BUGS-18 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 CCUG17874 hp0958KO- bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:32714 MBAD_32057.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.raw.1.zip E-BUGS-78-processed-data-1757476218.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.processed.1.zip Helicobacter pylori CCUG17874 reference gDNA wild type Helicobacter pylori ncbitax CCUG17874 P-MTAB-21571 12 100 rpm 1 37 BHI + 5%FBS see protocol 20 CCUG17874 culture (A)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23767 P-MTAB-21573 CCUG17874 gDNA (A)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768 genomic_DNA P-MTAB-21575 5 5 Cy3 Cy3 CCUG17874 (A4) Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 65 2 45 20 2 22 65 2 P-MTAB-21578 Hyb:32520 A-BUGS-18 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 CCUG17874 wild type bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:32714 MBAD_32056.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.raw.1.zip E-BUGS-78-processed-data-1757476218.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.processed.1.zip Helicobacter pylori CCUG17874 reference gDNA wild type Helicobacter pylori ncbitax CCUG17874 P-MTAB-21571 12 100 rpm 1 37 BHI + 5%FBS see protocol 20 CCUG17874 culture (A)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23767 P-MTAB-21573 CCUG17874 gDNA (A)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768 genomic_DNA P-MTAB-21575 5 5 Cy3 Cy3 CCUG17874 (A2)__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:23855 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 65 2 45 20 2 22 65 2 P-MTAB-21578 Hyb:32518 A-BUGS-18 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 CCUG17874 wild type bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:32718 MBAD_32068.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.raw.1.zip E-BUGS-78-processed-data-1757476218.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.processed.1.zip Helicobacter pylori CCUG17874__bugs.sgul.ac.uk:BuG@Sbase/BioSource:23811 wild type Helicobacter pylori ncbitax CCUG17874 P-MTAB-21571 12 100 rpm 1 37 BHI + 5%FBS see protocol 20 CCUG17874 culture (B)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23815 P-MTAB-21572 CCUG17874 total RNA (B) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 Cy5 4 4 Cy5 CCUG17874 (B1)__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:23817 Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 65 2 45 20 2 22 65 2 P-MTAB-21578 Hyb:32518 A-BUGS-18 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 CCUG17874 wild type bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:32718 MBAD_32069.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.raw.1.zip E-BUGS-78-processed-data-1757476218.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.processed.1.zip Helicobacter pylori CCUG17874 reference gDNA wild type Helicobacter pylori ncbitax CCUG17874 P-MTAB-21571 12 100 rpm 1 37 BHI + 5%FBS see protocol 20 CCUG17874 culture (A)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23767 P-MTAB-21573 CCUG17874 gDNA (A)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768 genomic_DNA P-MTAB-21575 5 5 Cy3 Cy3 CCUG17874 (A1)__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:23769 Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 65 2 45 20 2 22 65 2 P-MTAB-21578 Hyb:32517 A-BUGS-18 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 CCUG17874 wild type bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:32717 MBAD_32080.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.raw.1.zip E-BUGS-78-processed-data-1757476240.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.processed.1.zip Helicobacter pylori CCUG17874__bugs.sgul.ac.uk:BuG@Sbase/BioSource:23811 wild type Helicobacter pylori ncbitax CCUG17874 P-MTAB-21571 12 100 rpm 1 37 BHI + 5%FBS see protocol 20 CCUG17874 culture (A)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23812 P-MTAB-21572 CCUG17874 total RNA (A) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 Cy5 4 4 Cy5 CCUG17874 (A1)__bugs.sgul.ac.uk:BuG@Sbase/LabeledExtract:23814 Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 65 2 45 20 2 22 65 2 P-MTAB-21578 Hyb:32517 A-BUGS-18 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 CCUG17874 wild type bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:32717 MBAD_32081.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.raw.1.zip E-BUGS-78-processed-data-1757476240.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.processed.1.zip Helicobacter pylori CCUG17874 reference gDNA wild type Helicobacter pylori ncbitax CCUG17874 P-MTAB-21571 12 100 rpm 1 37 BHI + 5%FBS see protocol 20 CCUG17874 culture (A)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23767 P-MTAB-21573 CCUG17874 gDNA (A)__bugs.sgul.ac.uk:BuG@Sbase/BioSample:23768 genomic_DNA P-MTAB-21575 5 5 Cy3 Cy3 CCUG17874 (A6) Cy3 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 65 2 45 20 2 22 65 2 P-MTAB-21578 Hyb:32522 A-BUGS-18 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 CCUG17874 wild type bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:32713 MBAD_32054.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.raw.1.zip E-BUGS-78-processed-data-1757476218.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.processed.1.zip Helicobacter pylori hp0958 KO gene_knock_out hp0958KO- Helicobacter pylori ncbitax CCUG17874 P-MTAB-21571 12 100 rpm 1 37 BHI + 5%FBS see protocol 20 hp0958 KO culture (C) P-MTAB-21572 hp0958 KO total RNA (C) total_RNA bugs.sgul.ac.uk:BuG@Sbase/Protocol:39 Cy5 4 4 Cy5 hp0958 KO (C1) Cy5 synthetic_DNA The MGED Ontology bugs.sgul.ac.uk:BuG@Sbase/Protocol:30 65 2 45 20 2 22 65 2 P-MTAB-21578 Hyb:32522 A-BUGS-18 ArrayExpress bugs.sgul.ac.uk:BuG@Sbase/Protocol:69 CCUG17874 hp0958KO- bugs.sgul.ac.uk:BuG@Sbase/DerivedBioAssay:32713 MBAD_32055.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.raw.1.zip E-BUGS-78-processed-data-1757476218.txt ftp://ftp.ebi.ac.uk/pub/databases/microarray/data/experiment/BUGS/E-BUGS-78/E-BUGS-78.processed.1.zip