Biomod/2014/Sendai/Experiment

From OpenWetWare
Revision as of 12:55, 29 August 2014 by Shunsuke Imai (talk | contribs)
Jump to navigationJump to search

<html> <head> <style type="text/css">


html{

      background-color: #5b2d01;
      height: 100%;

} body{

      background-color: #f5e4b4;
      font-size: 1.4em;
      font-size: 125%;
      font-family:Arial,'Lucida Grande';
      height: 100%;

}


figure{

      margin-bottom: 10px;

} figcaption{

      font-size: 14px;

}


/* hiding wikiUI*/ .firstHeading {

display:none;

}

  1. content{
background-color: #f5e4b4;
background-image: linear-gradient(#f5e4b4,#eace7f);
border-style:none;
margin:0;
padding-top:0px;
padding-bottom:15px;
padding-right:0px;
padding-left:0px;
min-height:600px;

}

  1. globalWrapper{
font-size:100%;

}

  1. contentSub{
display:none;

}

  1. column-one{
display:none;

}

  1. footer{
display:none;

} /*----------*/

  1. header{
       height: 96px;
       width:1000px;
       margin:0 auto;
       margin-top: 10px;
       margin-bottom: 10px;

}

  1. left_header{

height: 96px; width: 96px;

       float:left;

}


  1. homebutton {
       width: 96px;
       height: 96px;
       float: left;

}

  1. homebutton li{
       display: inline;

}

  1. homebutton li a{
       float: left;
       height: 0px;
       width: 96px;
       padding-top: 96px;
       overflow-x: hidden;
       overflow-y: hidden;
       background-image: url(http://openwetware.org/images/0/02/Homebutton.png);
       background-repeat: no-repeat;

}


  1. homebutton #stamp a{ background-position: 0 -96px; }
  2. homebutton #stamp a:hover{ background-position: 0 0; }
  3. homebutton.home #stamp a{ background-position: 0 0; }



  1. globalnav {

height: 96px; width: 808px;

       float:left;

}


  1. globalnav li{

display: inline; }


  1. globalnav li a{

float: left; height: 0pt; padding-top: 96px; overflow-x: hidden; overflow-y: hidden; background-image: url(http://openwetware.org/images/e/e8/Uiparts_navigation-01.jpg); background-repeat: no-repeat; }


  1. globalnav #gn-home a{ width: 55px; }
  2. globalnav #gn-intro a{ width: 122px; }
  3. globalnav #gn-design a{ width: 84px; }
  4. globalnav #gn-simu a{ width: 118px; }
  5. globalnav #gn-xp a{ width: 114px; }
  6. globalnav #gn-protocol a{ width: 92px; }
  7. globalnav #gn-dis a{ width: 112px; }
  8. globalnav #gn-team a{ width: 78px; }
  9. globalnav #gn-end a{ width: 71px; }


  1. globalnav #gn-home a { background-position: 0 0; }
  2. globalnav #gn-intro a { background-position: -55px 0; }
  3. globalnav #gn-design a { background-position: -177px 0; }
  4. globalnav #gn-simu a { background-position: -261px 0; }
  5. globalnav #gn-xp a { background-position: -379px 0; }
  6. globalnav #gn-protocol a { background-position: -493px 0; }
  7. globalnav #gn-dis a { background-position: -585px 0; }
  8. globalnav #gn-team a { background-position: -697px 0; }
  9. globalnav #gn-end a { background-position: -775px 0; }


  1. globalnav #gn-home a:hover { background-position: 0 -96px; }
  2. globalnav #gn-intro a:hover { background-position: -55px -96px; }
  3. globalnav #gn-design a:hover { background-position: -177px -96px; }
  4. globalnav #gn-simu a:hover { background-position: -261px -96px; }
  5. globalnav #gn-xp a:hover { background-position: -379px -96px; }
  6. globalnav #gn-protocol a:hover { background-position: -493px -96px; }
  7. globalnav #gn-dis a:hover { background-position: -585px -96px; }
  8. globalnav #gn-team a:hover { background-position: -697px -96px; }


  1. globalnav #gn-home a:active { background-position: 0 -192px; }
  2. globalnav #gn-intro a:active { background-position: -55px -192px; }
  3. globalnav #gn-design a:active { background-position: -177px -192px; }
  4. globalnav #gn-simu a:active { background-position: -261px -192px; }
  5. globalnav #gn-xp a:active { background-position: -379px -192px; }
  6. globalnav #gn-protocol a:active { background-position: -493px -192px; }
  7. globalnav #gn-dis a:active { background-position: -585px -192px; }
  8. globalnav #gn-team a:active { background-position: -697px -192px; }


  1. globalnav.home #gn-home a { background-position: 0 -288px; }
  2. globalnav.intro #gn-intro a { background-position: -55px -288px; }
  3. globalnav.design #gn-design a { background-position: -177px -288px; }
  4. globalnav.simu #gn-simu a { background-position: -261px -288px; }
  5. globalnav.xp #gn-xp a { background-position: -379px -288px; }
  6. globalnav.protocol #gn-protocol a { background-position: -493px -288px; }
  7. globalnav.dis #gn-dis a { background-position: -585px -288px; }
  8. globalnav.team #gn-team a { background-position: -697px -288px; }


  1. wikiwrapper{
       width: 980px;
       background-color: #fffcf5;

}


  1. mainvisual{
       width: 980px;
       margin-left: auto;
       margin-right: auto;
       text-align: center;

}

  1. main{
       width: 980px;
       min-height: 600px;
       background-color: #fffcf5;
       padding-right: 15px;
       padding-left: 15px;
       padding-bottom: 150px;
       margin-right: auto;

margin-left: auto;

       text-align: justify;
       font-size: 110%;

}

p{

       text-indent:1em;

}


/*テーブルの色づけ*/

table.table tr:nth-child(odd) {

 /* 奇数行の背景色を設定します。 */
 background-color: #ecf6fb;

} table.table tr:nth-child(even) {

 /* 偶数行の背景色を設定します。 */
 background-color: #ffffff;

}

.overline{

       text-decolation: overline;
      }


/*simulationページの段組みコンテナ*/

  1. container {
      width: 100%;
      height: auto;    
      height: 100%;
      min-height: 100%;

}

div.blockleft{

      float: left;
      width: 625px;
      height: 475px;

} div.blockright{

      float:right;
      width: 355px;
      height: 490px;

div.blockleft2{

      float: left;
      width: 450px;
      height: 475px;

} div.blockright2{

      float:right;
      width: 450px;
      height: 475px;

} div.block{

      width:980px;
      height: 475px;
      margin-bottom: 20px;

}

p.textbox{

      padding:20px;

}

div.blockright span{

      vertical-align: middle;

}


  1. new_footer{
       margin-top:30px;

padding-top:15px; width:100%; height:100px; background-color:#5b2d01; color:#fff;

       font-size: 125%;
       position: absolute;
       bottom: 0;
       display: inline;

}

.lefttext{

       height:auto;
       width:30%;
       padding-left:20%;
       float:left;

}

.rightimg{

       height:auto;
       width:30%;
       padding-left:20%;

}

</style> </head> </html> <html> <head> <title></title> </head>

<body>

Experiment

The <a href="/wiki/Biomod/2014/Sendai/Simulation">simulation</a> proves that our system works properly. As a next step, we would like to do some experiments to confirm the system really works. The preparation for these experiments has been already finished.We have gotten DNA strands and enzymes as follows.

All sequences which needs for experiment are shown in Fig.1.

<img src="http://openwetware.org/images/5/5d/Experiment2014sendai.jpg" width="980" height="358">
Fig.1 #


Input 1 CTAGAACATACGCATTTGATTCGCGAATTCAGCAGTACTATTCAAGCGACGGCT
Input 2 CTAGAACATACGCATTTGATTCGCCCATGGAGCAGTACTATTCAAGCGACGGCT
Input 3 CTAGAACATACGCATTTGATTCGCAGATCTAGCAGTACTATTCAAGCGACGGCT
Template A TCACTTCTGCATCGATCACGACTAGCCGTCGCTTGAATAGTGTTA
Gate A + AGCGTCATCGGTCTTTAAGCAGTACTATTCAAGCGACGGCTTCACTTCTGC
Gate A - 1 TCACGACTCAGCCGTCGCTTGAATAGTACTGCTGAATTCCCGATGACGCT
Gate A - 2 TCACGACTCAGCCGTCGCTTGAATAGTACTGCTCCATGGCCGATGACGCT
Gate A - 3 TCACGACTCAGCCGTCGCTTGAATAGTACTGCTAGATCTCCGATGACGCT
Output A TAGGTACGCTCCGACAAGGT
Anchor ACCTTGTCGGAGCGTACCTATCACTTCTGCATCGA
Key-DNA(A1) TCGATGCAGAAGTGA


We are about to begin these experiments!

<img src="http://openwetware.org/images/d/df/Underconstruction.jpg" width="980px" height="653px">
Fig.2


(C)Copyright Biomod 2014 Team Sendai
E-MAIL: <a href="mailto:teamsendai2014@gmail.com">teamsendai2014@gmail.com</a>

</body> </html>