OpenWetWare:Presentations/NCI-ICBP: Difference between revisions
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<h1>''OpenWetWare''</h1> | |||
<h2>''A wiki for capturing and sharing biological knowledge''</h2> | |||
<h2>''[[User:Reshma_P._Shetty|Reshma P. Shetty]] and [[User:Jmuhlich|Jeremy Muhlich]]''</h2> | |||
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=Problem= | |||
''Much of the knowledge produced by biological research is passed down by oral tradition.'' | |||
''This makes it difficult for newcomers to enter the field.'' | |||
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=Solution: OpenWetWare= | |||
[[Image:Openwetwarehomepage.png|800px]] | |||
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=OpenWetWare's contributions= | |||
{| | |||
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# ''Easy and collaborative content generation'' | |||
# ''Community discourse'' | |||
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=Labs on OpenWetWare= | |||
[[Image:SilverLabhomepage.png|800px]] | |||
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=Integrating OpenWetWare into research= | |||
[[Image:SilverProtocolshomepage.png|800px]] | |||
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=Examining Communication= | |||
'''Ethnomethodology:''' | |||
A sociological discipline which focuses on the ways in which people make sense of their world, display this understanding to others, and produce the mutually shared social order in which they live. ''(Wikipedia)'' | |||
'''Discourse Analysis''' | |||
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=Dysfunctionality of Model Publishing= | |||
[[Image:Icbp-talk-pyramid.png]] | |||
'''figure: Ty Thomson''' | |||
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=Systematization and Data Standards= | |||
<html><img src="http://www.fotosearch.com/thumb/ICL/ICL154/BIM_116.jpg"</img></html> | |||
* Standards for models | |||
** MIRIAM - Minimum Information Requested in the Annotation of Biochemical Models | |||
** SBML - Systems Biology Markup Language | |||
* Communicating with computers, not people | |||
* Rigid, one-way "conversation" | |||
</div> | |||
<div class="slide"> | <div class="slide"> | ||
=Literate Programming= | |||
Donald Knuth, 1981 | |||
Write programs primarily for humans, not computers | |||
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'' | <div class="slide"> | ||
=YeastPheromoneModel.org= | |||
''Ty Thomson, MIT'' | |||
[[Image:Yeastpheromonemodel home page.png]] | |||
</div> | </div> | ||
<div class="slide"> | <div class="slide"> | ||
=YeastPheromoneModel.org= | |||
[[Image:Yeastpheromonemodel reaction page.png]] | |||
</div> | |||
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=80-20 Rule / Pareto Principle= | |||
[[Image:Pareto.png]] | |||
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<div class="slide"> | <div class="slide"> | ||
=How do we communicate the final 20% ?= | |||
* Verbal, email, etc. | |||
* Wiki | |||
Conversation is robust, and necessary anyway | |||
</div> | </div> | ||
<div class="slide"> | <div class="slide"> | ||
=Agile Informatics effort= | |||
[http://ome-sorger7.mit.edu/~jmuhlich/mwtest/ Wiki-based model documentation] | |||
''with Brian Joughin, MIT/ICBP'' | |||
To be integrated into OWW | |||
Part of a larger workflow:<br> | |||
[[Image:OverallWorkflow.png]] | |||
</div> | |||
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="Living" Models= | |||
</div> | |||
<div class="slide"> | |||
=OpenWetWare's success= | |||
* ''2,800 contributors'' | |||
* ''100 labs'' | |||
* ''1.5 million pageviews per month'' | |||
* ''275,000 sessions per month'' | |||
<br> | |||
<span style="font-size:300%;">http://openwetware.org</span> | |||
</div> | </div> | ||
__NOTOC__ | __NOTOC__ |
Latest revision as of 07:09, 14 June 2007
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