Maloof Lab:Resources: Difference between revisions

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Add link for At RIL field phenotype
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[http://www.plb.ucdavis.edu/labs/maloof/resources/At_Col_RIL_combined_gt_db8010206.csv Col x X genotype data]
[http://www.plb.ucdavis.edu/labs/maloof/resources/At_Col_RIL_combined_gt_db8010206.csv Col x X genotype data]


RIL genotyping data from MSATs run in the Maloof Lab and by Sequenom SNP analysis.  For RIL constuction, Col was crossed to an unknown accession; resulting F2 plants were self-fertilized until the F8 generation and then genotyped.  Genotyping revealed a strong bias to Col genotypes and higher heterozygosity than expected.  Subsequent flow cytometry analysis by [http://web.ics.purdue.edu/~bdilkes/Site/Welcome.html Brian Dilkes] revealed that some RILs are tetraploid and that the Col parent was likely tetraploid.  Flow cytometry data will be made available when analysis is complete.
RIL genotypic data from MSATs run in the Maloof Lab and by Sequenom SNP analysis.  For RIL constuction, Col was crossed to an unknown accession; resulting F2 plants were self-fertilized until the F8 generation and then genotyped.  Genotyping revealed a strong bias to Col genotypes and higher heterozygosity than expected.  Subsequent flow cytometry analysis by [http://web.ics.purdue.edu/~bdilkes/Site/Welcome.html Brian Dilkes] revealed that some RILs are tetraploid and that the Col parent was likely tetraploid.  Flow cytometry data will be made available when analysis is complete.




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====Col x X====
====Col x X====
[http://www.plb.ucdavis.edu/labs/maloof/resources/At_Col_RILs_field_phenotypes.xls Col x X field phenotype data]
[http://www.plb.ucdavis.edu/labs/maloof/resources/At_Col_RILs_field_phenotypes.xls Col x X field phenotype data]
RIL Phenotypic data from field grown plants in Minnesota.  Data collection by Weinig Lab.  See notes above for information on RIL construction.

Revision as of 17:42, 11 July 2009

Room 2115
Section of Plant Biology
1002 Life Sciences, One Shields Ave.
University of California Davis
Davis, CA 95616

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Genotype Data

Col x X

Col x X genotype data

RIL genotypic data from MSATs run in the Maloof Lab and by Sequenom SNP analysis. For RIL constuction, Col was crossed to an unknown accession; resulting F2 plants were self-fertilized until the F8 generation and then genotyped. Genotyping revealed a strong bias to Col genotypes and higher heterozygosity than expected. Subsequent flow cytometry analysis by Brian Dilkes revealed that some RILs are tetraploid and that the Col parent was likely tetraploid. Flow cytometry data will be made available when analysis is complete.


Phenotype Data

Col x X

Col x X field phenotype data

RIL Phenotypic data from field grown plants in Minnesota. Data collection by Weinig Lab. See notes above for information on RIL construction.

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