Van Oudenaarden Lab:F38C2.2

Progress:

Probes designed: (03-01-2010 - Alexander van Oudenaarden)

Probes coupled:

Probes purified:

Probes tested:

Dyes available:

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>F38C2.2 (hlh-17 spliced coding region)

tggggtccctggggactctcctcgcggggtactgtaactttggaggcggagtttttgattttcagagattttttcgggaa atagttgtcgttaca

atggagaaaattggaattgatactgctttcgctgagcctggtgttcgactttccatcaatttgagagaaagatgccgaat gcatgacttaaacgaggcacttgacgatctgcgagctgtaattccatatgctcacgggggttccgtgaggaagttgagca agattgctacgttgcttttggccaaaaatcatattatcatgcaggcaaaagcaattgaggagctgagtatattggtctcc cagttgaagcggaaatcggaaaatttggagaacttgaacaaatccttaaagcctgatgcaaactga

acattgaaaagttttcaattttttcaatcaattaattttatatttttattccgtatggtttttttttcttt tttttcacttcggttgaaaattttaattattcaactgtttccataaat

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Name of probe set: hlh-17

Probes designed on Mon, 01 Mar 10 14:39:15 -0700

23 probes designed for target of length 520 (target too short for 48 probes)

Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC

gagagtccccagggacccca, hlh-17_1, 1, 1, 70

caaagttacagtaccccgcg, hlh-17_2, 2, 23, 55

tgaaaatcaaaaactccgcc, hlh-17_3, 3, 45, 40

aactatttcccgaaaaaatc, hlh-17_4, 4, 67, 30

caattttctccattgtaacg, hlh-17_5, 5, 89, 35

tcagcgaaagcagtatcaat, hlh-17_6, 6, 111, 40

gatggaaagtcgaacaccag, hlh-17_7, 7, 133, 50

ttcggcatctttctctcaaa, hlh-17_8, 8, 155, 40

agtgcctcgtttaagtcatg, hlh-17_9, 9, 177, 45

aattacagctcgcagatcgt, hlh-17_10, 10, 199, 45

cggaacccccgtgagcatat, hlh-17_11, 11, 221, 60

gcaatcttgctcaacttcct, hlh-17_12, 12, 243, 45

atttttggccaaaagcaacg, hlh-17_13, 13, 265, 40

gcttttgcctgcatgataat, hlh-17_14, 14, 288, 40

caatatactcagctcctcaa, hlh-17_15, 15, 310, 40

atttccgcttcaactgggag, hlh-17_16, 16, 332, 50

ttcaagttctccaaattttc, hlh-17_17, 17, 354, 30

tgcatcaggctttaaggatt, hlh-17_18, 18, 376, 40

gaaaacttttcaatgttcag, hlh-17_19, 19, 398, 30

aaattaattgattgaaaaaa, hlh-17_20, 20, 420, 10

gaaaaaaaaaccatacggaa, hlh-17_21, 21, 450, 30

tttcaaccgaagtgaaaaaa, hlh-17_22, 22, 472, 30

ggaaacagttgaataattaa, hlh-17_23, 23, 495, 25