Berk2006-Oligos: Difference between revisions
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Return to [http://www.openwetware.org/wiki/IGEM:UC_Berkeley/2006 main page] | Return to [http://www.openwetware.org/wiki/IGEM:UC_Berkeley/2006 main page] | ||
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!width="40"|Name | !width="40"|Name | ||
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!width="225"|Sequence | !width="225"|Sequence | ||
!width="225"|Sites | !width="225"|Sites | ||
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| ca997F || EIPCR for Biobrick p15A/CmR plasmid || ctcgaGGATCCTGCAGctagaaatattttatctgatt || BamHI,PstI | | ca997F || EIPCR for Biobrick p15A/CmR plasmid || ctcgaGGATCCTGCAGctagaaatattttatctgatt || BamHI,PstI |
Revision as of 21:25, 31 July 2006
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Name | Description | Sequence | Sites
|
---|---|---|---|
ca997F | EIPCR for Biobrick p15A/CmR plasmid | ctcgaGGATCCTGCAGctagaaatattttatctgatt | BamHI,PstI |
ca998 | Forward Sequencing of pSB1A2 | gtatcacgaggcagaatttcag | |
ca999 | Reverse sequencing of pSB1A2 (fails, don't use) | ccgtattaccgcctttgagtg | |
2005iGEM1 | RlamFwd | caatcacgcgcaccccccggccgttttagcggctaaaaaagtcatgtgtaggctggagctgcttc | |
2005iGEM2 | RlamRev | acagcagggaagcagcgcttttccgctgcataaccctgcttcgggatgggaattagccatggtcc | |
2005iGEM3 | TraJ-F-Rev | TTAACGCGTATTTATGATACACATAGC | |
2005iGEM4 | TraJ-F-For | ATGTATCCGATGGATCGTATTCAAC | |
2005iGEM5 | TraJF-BBRev | CACGAACTGCAGCGGCCGCTACTAGTAttaacgcgtatttatgatacacatagc | |
2005iGEM6 | FCtra-rev | CCATAGATATTCCCTGCCCTG | |
2005iGEM7 | FCtra-fwd | CTCAGTCCTCATGTCTCCGG | |
2005iGEM8 | OriTBackwardBB | CATTAGAGATTACCTTTTTTGAAC | |
2005iGEM9 | oriTforwardF | AAGGCTCAACAGGTTGGTGGTTC | |
2005iGEM10 | TraJF-BBFor | gcagcaGAATTCGCGGCCGCTTCTAGAGatgtatccgatggatcgtattcaac | |
2005iGEM11 | TraJR-BBRev | CACGAACTGCAGCGGCCGCTACTAGTAtcatggctctgccctcg | |
2005iGEM12 | TraJR-BBFor | gcagcaGAATTCGCGGCCGCTTCTAGAGatggctgatgaaaccaagcc | |
2005iGEM13 | FTJiamR | CAGAAAAGACGGAAAGTCTATATTTTATTAACACCTTATTAACGCG ATGGGAATTAGCCATGGTCC | |
2005iGEM14 | OriT-R-Rev | TTTTCCGCTGCATAACCCTGC | |
2005iGEM15 | TraJ-R-For | ATGGCTGATGAAAGCAAGCC | |
2005iGEM16 | TraJ-R-Rev | TCATGGCTCTGCCTCG | |
2005iGEM17 | OriT-R-For | GCCGCCTTTTCCTCAATCG | |
2005iGEM18 | FTJiamF | ggtgacagtacgaaagataattagtatattaattacgtggttaat gtgtaggctggagctgcttc | |
2005iGEM19 | FORlamF | tttatccgtaaataatttaacccactccacaaaaaggctcaacag gtgtaggctggagctgcttc | |
2005iGEM20 | FORlamR | ggaccatggctaattcccat ctctttatgatatttaaaaaagcggtgtcggcgcggctacaacaa | |
2005iGEM21 | tabbR | CTGCAGCGGCCGCTACTAGTAATTATAG... | |
2005iGEM22 | tabb1R | CTGCAGCGGCCGCTACTAGTATCTGCAG... | |
2005iGEM23 | tabb2R | CTGCAGCGGCCGCTACTAGTAATAACGT... | |
2005iGEM24 | crbb1R | CTGCAGCGGCCGCTACTAGTATCTCCTC... | |
2005iGEM25 | crbb2R | CTGCAGCGGCCGCTACTAGTATCTCCTC... | |
2005iGEM26 | tabb2F | GAATTCGCGGCCGCTTCTAGAGACCCAA... | |
2005iGEM27 | crR12wBBR | AGCAGCCTGCAGCGGCCGCTACTAGTAG... | |
2005iGEM28 | rrnBP1F | GCAGCAGAATTCGCGGCCGCTTCTAGAG... | |
2005iGEM29 | crbb2F | GAATTCCGGCCGCTTCTAGAGAACTAG... | |
2005iGEM30 | rrnBP1R | AGCAGCCTGCAGCGGCCGCTACTAGTAG... | |
2005iGEM31 | crR12wBBF | GCAGCAGAATTCGCGGCCGCTTCTAGAG... | |
2005iGEM32 | Vlad-fwd | ATACTCGAGATGGCGAGCAGTGAGGACA... | |
2005iGEM33 | vlad-rev | ATAGAATTCTACAGGAAGAGGTGGTGG | |
2005iGEM34 | crbb1F | GAATTCGCGGCCGCTTCTAGAGAACTAG... | |
2005iGEM35 | tabbF | GAATTCGCGGCCGCTTCTAGAGAGAAAA... | |
2005iGEM36 | tabbF | GAATTCGCGGCCGCTTCTAGAGACCCAA... | |
2005iGEM37 | ChrrF | GCAGCAGAATTCGCGGCCGCTTCTAGAGATGACGATCCGGCACCATGT | |
2005iGEM38 | ChrR Reverse | CACGAACTGCAGCGGCCGCTACTAGTATCAGATGCGGAAGAAGGGCT | |
2005iGEM39 | Predreverse | TCGACTTCTGCAGCGGCCGCTACTAGTA... | |
2005iGEM40 | RpoEreverse | TCGACTTCTGCAGCGGCCGCTACTAGTATCAACTCATATGCTGGCGCAGACG | |
2005iGEM41 | gfp_r | GCGGCGAAGCTTTTCCATGCC | |
2005iGEM42 | gfp_f1 | GCGGCGGGTACCCAGAACT | |
2005iGEM43 | RpoEforward | CCTAGGAATTCGCGGCCGCTTCTAGAGGTGACGGACAAGAGTGACAGGAC | |
2005iGEM44 | RpoEp1reverse | TCGACTTCTGCAGCGGCCGCTACTAGTACCGCCCGGAGGTGAAGATAG | |
2005iGEM45 | RpoEp1forward | CCTAGGAATTCGCGGCCGCTTCTAGAGTTTTTCCCGCCTCCCGCCTG | |
2005iGEM46 | spoIIEreverse | TCGACTTCTGCAGCGGCCGCTACTAGTATCCTCTCATCTCCCACCTGTTATAT | |
2005iGEM47 | SpoIIEforward | CCTAGGAATTCGCGGCCGCTTCTAGAGCGGGTCATCCTAACAAATCGGTTTC | |
2005iGEM48 | BPredForrward | CCTAGGAATTCGCGGCCGCTTCTAGAGATGGCGAGCAGTGAGGACATCATC | |
ca1000 | Forward sequencing of pSB3C6 (pAC997) | cagggcagggtcgttaaatagc | |
ca1001 | Reverse sequencing of pSB3C6 (pAC997) | ggcggttttttcgttttcagagc | |
BBa_G00101 | Reverse sequencing of pSB1A* plasmids | attaccgcctttgagtgagc | |
ca1002F | Forward EcoRI oligo to make XbaI blunter cassette | cttctggaattcgcggccgcaactagtgtccctatcag | |
ca1002R | Reverse PstI oligo to make SpeI blunter cassette | gaagcctgcagcggccgctTctagAatataaacgcag | |
ca994F | forward Xba1 library for Key3 | CCTATtctagaGACCCAAAAGCANGAGGNNNNNNTAGTNGGTGGTTAATGAAAATTAACTTACTTACTAG | |
KB001 | Forward EcoRI to construct Ptet part-making biobrick plasmid | ttctggaattcgcggccgcaactagagccaggcatc | |
KB002 | Reverse XbaI to construct Ptet part-making biobrick plasmid | ccgctTctagAagtgctcagtatc | |
KB003 | Forward XbaI oligo for part3b | ctccatctagagACCCAAAAGCAAGAGGTGATTCTAGTTtac | |
KB004 | Reverse PstI oligo for part3b | gcgaactgcagcggccgctactagtaAACTAGAATCACCTCTTG | |
KB005 | Forward XbaI oligo for part 3c | ccatatctagagACCCAAAAGCAAGAGGTGATTCTAGTTggtggttaatgaaaattaacttacttactagaaat | |
KB006 | Reverse PstI oligo for part 3c | catctctgcagcggccgctactagtaaagccggattaataatctggctttttagagatatttctagtaagtaagttaa | |
KB007 | Forward XbaI oligo for part 3d | TctagAgcgggcgggcgggcgggcgggatccataaaaaaaaaACCCAAAAGCAAGAGGTGATTCTAGTTaaa | |
KB008 | Reverse PstI oligo for part 3d | ctgcaggcggccgctactagtacgggcgggcgggcgggcgggaagctttttttttttAACTAGAATCACCTCTT | |
JL1 | Forward EcoRI to make spectinomycin resistance biobrick | gacttgaattcgcggccgcttctagagtccaagcgagctcgatatc | |
JL2 | Reverse SpeI to make spectinomycin resistance biobrick | ccgctactagtCAGCAACGATGTTACGCAGC | |
JL3 | forward oligo to characterize oriTF/TraM region | gatggcattaacccggtaac | |
JL4 | reverse oligo to characterize oriTF/TraM region+50bp | ctaattatctttcgtactgtc | |
JL5 | Forward EcoRI oligo to bioBrick TraM | CCTAGGAATTCGCGGCCGCTTCTAGatggctaaggtgaacctgtatatcagc | |
JL6 | Reverse SpeI oligo to bioBrick TraM | gacttACTAGTgtcaaatttcgtttattcatc | |
JL7 | Reverse knockout oligo for oriT/traM | cataaaaactctgatatttgaacgaagtcaaatttcgtttATGGGAATTAGCCATGGTCC | |
JL8 | Forward oligo to knockout traG-R | atgaagaaccgaaacaacgccgtggggccacagatacgggcgaaagtgCaggctggagctgcttcgaag | |
JL9 | Reverse oligo to knockout traG-R | tcatatcgtgatcccctccccttcctcgacggtggccgtctggattgggaaGtagccatggtccatatg | |
JL10 | Forward EcoRI oligo to bioBrick TraG *Internal NotI site | CCTAGGAATTCGCGGCCGCTTCTAGatgaagaaccgaaacaacgc | |
JL11 | Reverse SpeI oligo to bioBrick TraG *internal NotI site | gacttACTAGTgaagcggctcatatcgtgatc | |
JL12 | Forward oligo to knockout trbC |
atgaagctgagtatgaaatctctggcagcactgctgatgatgctggtgCaggctggagctgcttcgaag | |
JL13 | Reverse oligo to knockout trbC | tcatttcccggaatctcctttccctgccagtaaatcatgagccactgggaaGtagccatggtccatatg | |
JL14 | Forward EcoRI oligo to bioBrick trbC *internal PstI site | CCTAGGAATTCGCGGCCGCTTCTAGatgaagctgagtatgaaatc | |
JL15 | Reverse SpeI oligo to bioBrick trbC *internal PstI site | gacttACTAGTcgtttcatttcccggaatctc | |
KB009 | Forward Ptet screening oligo | tccctatcagtgatagagat | |
KB010 | Forward Lock2 screening oligo | aactagaatcacctctagtg | |
KB011 | Forward mRFP1 screening oligo | atggcttcctccgaagacgt | |
KB012 | KB009 5' add on | CACTGTctagAgcgggcgggcgggc | |
KB013 | KB010 3' add on | CCAAActgcaggcggccgctactag | |
JL16 | Forward trbC 20mers | gctggcgttaccagatggtg | |
JL17 | Reverse trbC 20mers | gccctgaatactgctgcttcc | |
KB014 | Lock3 4 base add-on to 3' end of hairpin loop forward oligo | GTCGATCTAGAGAACTAGAATCACCTCTTGCTTTTGGGTAAGAC | |
KB015 | Lock3 1 base add-on to 3' end of hairpin loop reverse oligo | CCGATCTGCAGCGGCCGCTACTAGTATCTCCTCTTGTCTTACCCAAAAGCAAGAG | |
KB016 | Lock3 2 base add-on to 3' end of hairpin loop reverse oligo | CCGATCTGCAGCGGCCGCTACTAGTATCTCCTCTTCGTCTTACCCAAAAGCAAGAG | |
KB017 | Lock3 4 base add-on to 3' end of hairpin loop reverse oligo | CCGATCTGCAGCGGCCGCTACTAGTATCTCCTCTTCTGTCTTACCCAAAAGCAAGAG | |
KB018 | Lock3 one point mutation on the 5' end of the 3' homology region forward oligo | GTCGATCTAGAGAACTAGAATCAACTCTTGCTTTTGGGTAAGAAAGAGG | |
KB019 | Lock3 one point mutation on the 5' end of the 3' homology region reverse oligo | CCGATCTGCAGCGGCCGCTACTAGTATCTCCTCTTTCTTACCCAAAAGC | |
KB020 | Lock3 two consecutive point mutations on the 5' end of the 3' homology region forward oligo | GTCGATCTAGAGAACTAGAATCAATTCTTGCTTTTGGGTAAGAAAGAGG | |
KB021 | Lock3 one point mutation on the 3' end of the 3' homology region forward oligo | GTCGATCTAGAGAACTAGAATCACCTCTAGCTTTTGGGTAAGAAAGAGG | |
KB022 | Lock3 two consecutive point mutations on the 3' end of the 3' homology region forward oligo | GTCGATCTAGAGAACTAGAATCACCTCAAGCTTTTGGGTAAGAAAGAGG
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