Registry of Standard Biological Models/Basic Component Models/Activated Promoter: Difference between revisions
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==CellML structure (CellML 1.1 spec)== | ==CellML structure (CellML 1.1 spec)== | ||
*'''Component''': | *'''Component''': ActivatedPromoter | ||
*'''Units''': | *'''Units''': | ||
**TBD | **TBD | ||
Revision as of 18:20, 7 September 2006
ID: Activated Promoter
- Description: Promoter activated by an activator molecule
- Hypothesis:
- Simple binding of the activator on the promoter (monod-type equation)
- Continuous transcription rate with an existing maximum rate of transcription
- Transcription rate depends on number of gene copies
- Inputs:
- nb-gene-copies
- activator
- Outputs:
- PoPs
- Internal parameters:
- max-transcription-rate (per gene copy)
- sensitivity
CellML structure (CellML 1.1 spec)
- Component: ActivatedPromoter
- Units:
- TBD
- Variables:
- nbGeneCopies (public interface = in / init value = 1.0)
- maxTranscriptionRate (public interface = none / init value = XXX)
- sensitivity (public interface = none / init value = XXX)
- activator (public interface = in )
- PoPsOUT (public interface = out / init value = 0.)
- MathML
- <amsmath>PoPsOUT = \frac{maxTranscriptionRate*nbGenesCopies*activator}{sensitivity + activator}</amsmath>
