Beauchamp:Lab Notebook: Difference between revisions
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==General Notes== | To search for things on the wiki, use Google's site search feature. For instance, to find an Experiment Sheet, type | ||
site:openwetware.org/wiki/Beauchamp ExperimentSheet | |||
==General Important Notes== | |||
#[[Beauchamp:Software_Installation|How To Install Software and set up new computers]] | #[[Beauchamp:Software_Installation|How To Install Software and set up new computers]] | ||
#[[Beauchamp:Ordering|How To order things for the lab]] | #[[Beauchamp:Ordering|How To order things for the lab]] | ||
== | ==Experimental Design and Analysis== | ||
#[[Beauchamp: | #[[Beauchamp:fMRIOverview|Overview of MRI Experiments]] | ||
#[[Beauchamp:Subjects|Information for Subjects and Experimenters, such as Human Subjects Training]] | |||
#[[Beauchamp:HowToScan|How to Collect MRI Data and Use the Scanner]] | |||
#[[Beauchamp: | #[[Beauchamp:CreateAFNIBRIKfromMR|Getting raw data from the scanner]] | ||
#[[Beauchamp: | #[[Beauchamp:CreateAFNIBRIK|Turning the raw data into AFNI BRIKs]] | ||
#[[Beauchamp: | #[[Beauchamp:CorticalSurfaceOverview|Cortical Surface models overview]] | ||
#[[Beauchamp: | #[[Beauchamp:RandomStimulus|Creating Random Stimulus Orderings For Rapid Event-Related Designs]] | ||
#[[Beauchamp: | |||
#[[Beauchamp: | |||
#[[Beauchamp:MotionCorrection|Motion and Distortion Correction]] | #[[Beauchamp:MotionCorrection|Motion and Distortion Correction]] | ||
#[[Beauchamp:VolAverage|Creating Volume Average Datasets with AFNI]] | #[[Beauchamp:VolAverage|Creating Volume Average Datasets with AFNI]] | ||
#[[Beauchamp: | #[[Beauchamp:MVPA Notes|MVPA Notes]] | ||
#[[Beauchamp:RealTimefMRI|RealTimefMRI]] | |||
#[[Beauchamp:GroupAna|Group Analysis with Unequal Group Sizes using GroupAna.m]] | |||
#[[Beauchamp:HiResfMRI|HiResolution fMRI]] | |||
#[[Beauchamp:ROIanalysis|ROI Analysis]] | |||
==MRI: DTI Analysis== | ==MRI: DTI Analysis== | ||
Line 37: | Line 32: | ||
==TMS/TMS+MRI== | ==TMS/TMS+MRI== | ||
#[[Beauchamp:TMSOverview|Overview of an MRI/fMRI guided TMS Experiment]] | |||
#[[Beauchamp:TMS|Notes on TMS]] | #[[Beauchamp:TMS|Notes on TMS]] | ||
==NIRS== | |||
#[[Beauchamp:NIRS|Eswen Fava's NIRS Manual]] | |||
==Electrophysiology/Electrophysiology+MRI== | ==Electrophysiology/Electrophysiology+MRI== | ||
#[[Beauchamp:Electrode Localization and Naming]] | |||
#[[Electrode Localization and Naming]] | |||
#[[Beauchamp:Electrophysiology|Electrophysiology Protocols]] | #[[Beauchamp:Electrophysiology|Electrophysiology Protocols]] | ||
#[[Beauchamp:ECogAnalysis|Analyzing ECoG data (by Adam Burch)]] | #[[Beauchamp:ECogAnalysis|Analyzing ECoG data (by Adam Burch)]] | ||
#[[Beauchamp:ECogAnalysisv2|Analyzing ECoG data (by Muge Ozker Sertel)]] | |||
#[[Making Resting State Correlation Maps]] | |||
==Psychophysics== | ==Psychophysics== | ||
G Power 3 is a useful program for power analysis | |||
http://www.psycho.uni-duesseldorf.de/abteilungen/aap/gpower3/ | |||
#[[Beauchamp:AuditoryTactile|New Auditory Tactile Experiment]] | #[[Beauchamp:AuditoryTactile|New Auditory Tactile Experiment]] | ||
#[[Beauchamp:dprime|d' (d-prime) Analysis]] | #[[Beauchamp:dprime|d' (d-prime) Analysis]] | ||
#[[Beauchamp:RaceModel|Race Model Analysis]] | #[[Beauchamp:RaceModel|Race Model Analysis]] | ||
#[[Beauchamp:100Hue|Stimuli for 100 Hue Experiment]] | |||
#[[Beauchamp:CIMS|Causal Inference model for Synchrony Perception]] | |||
#[[Beauchamp:MCG_Predict|Predicting McGurk Fusion Rates]] | |||
==Misc. Experiment Notes== | ==Misc. Experiment Notes== | ||
#[[Beauchamp:Stimuli|McGurk Stimuli]] | #[[Beauchamp:Stimuli|McGurk Stimuli]] | ||
#[[Beauchamp:Autism|Autism Data]] | #[[Beauchamp:Autism|Autism Data]] | ||
#[[Beauchamp:EyeTrackSetup| | #[[Beauchamp:NewEyeTrackSetup|SR EyeLink Eye Tracker Setup]] | ||
#[[Beauchamp:EyeTrackSetup|OLD ASL Eye Tracker Setup]] | |||
#[[Beauchamp:Retinotopy|Retinotopic Mapping ]] | #[[Beauchamp:Retinotopy|Retinotopic Mapping ]] | ||
#[[Beauchamp:ZillesAtlasValues|AFNI Atlas Values]] | #[[Beauchamp:ZillesAtlasValues|AFNI Atlas Values]] | ||
#[[Beauchamp:Tactile_Experiment_Notes|Tactile Experiment Notes]] | #[[Beauchamp:Tactile_Experiment_Notes|Tactile Experiment Notes]] | ||
#[[Beauchamp:MRI_Data_Analysis|Notes on analyzing MRI data (old)]] | #[[Beauchamp:MRI_Data_Analysis|Notes on analyzing MRI data (old)]] | ||
#[[Beauchamp:ANOVAs in MATLAB|ANOVAs in MATLAB]] | |||
#[[Media:Beauchamp-Projector_settings.pdf|HNL Projector Settings]] | |||
#[[Beauchamp:ProjectionNotes|Notes on Stimulus Projector and Screen in UT Philips Scanner]] | |||
#[[Beauchamp:Unisensory Stimuli|Auditory-only stimuli]] | |||
#[[Beauchamp:VideoStimulusCreation|Video Stimulus Creation]] |
Revision as of 09:03, 14 May 2014
To search for things on the wiki, use Google's site search feature. For instance, to find an Experiment Sheet, type
site:openwetware.org/wiki/Beauchamp ExperimentSheet
General Important Notes
Experimental Design and Analysis
- Overview of MRI Experiments
- Information for Subjects and Experimenters, such as Human Subjects Training
- How to Collect MRI Data and Use the Scanner
- Getting raw data from the scanner
- Turning the raw data into AFNI BRIKs
- Cortical Surface models overview
- Creating Random Stimulus Orderings For Rapid Event-Related Designs
- Motion and Distortion Correction
- Creating Volume Average Datasets with AFNI
- MVPA Notes
- RealTimefMRI
- Group Analysis with Unequal Group Sizes using GroupAna.m
- HiResolution fMRI
- ROI Analysis
MRI: DTI Analysis
- Processing Diffusion Tensor Imaging Data
- Automatic VOI Initialization for Interactive Tractography
- Deterministic Tractography Constrained by Image Masks
TMS/TMS+MRI
NIRS
Electrophysiology/Electrophysiology+MRI
- Beauchamp:Electrode Localization and Naming
- Electrophysiology Protocols
- Analyzing ECoG data (by Adam Burch)
- Analyzing ECoG data (by Muge Ozker Sertel)
- Making Resting State Correlation Maps
Psychophysics
G Power 3 is a useful program for power analysis http://www.psycho.uni-duesseldorf.de/abteilungen/aap/gpower3/
- New Auditory Tactile Experiment
- d' (d-prime) Analysis
- Race Model Analysis
- Stimuli for 100 Hue Experiment
- Causal Inference model for Synchrony Perception
- Predicting McGurk Fusion Rates
Misc. Experiment Notes
- McGurk Stimuli
- Autism Data
- SR EyeLink Eye Tracker Setup
- OLD ASL Eye Tracker Setup
- Retinotopic Mapping
- AFNI Atlas Values
- Tactile Experiment Notes
- Notes on analyzing MRI data (old)
- ANOVAs in MATLAB
- HNL Projector Settings
- Notes on Stimulus Projector and Screen in UT Philips Scanner
- Auditory-only stimuli
- Video Stimulus Creation