Van Oudenaarden Lab:C33D12.1

Progress:

Probes designed: (03-01-2010 - Alexander van Oudenaarden)

Probes coupled:

Probes purified:

Probes tested:

Dyes available:

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>C33D12.1 (ceh-31 spliced coding region)

tcacactaaactactgtctaaaagtcattcaatttgactattacaaaacttattgtattgttacatcatctgataaggtt atcataaca

atgtcaatgttggatctccgtcagtttctgattcctgcattctttctagaccccaccaaccaacttgctgctcagagttc ttccggtggcgcgaagataaacttaaacagctcttttcgcatttctgatctgcttgatccaacttcacactcaaccaacg aaccagatccatctcctacctccattaattcctcggaatcgccatcatcccctagaattgggagcccgaataccgaaaga tctgtgaacgagagtccgacatgcgtgggatcaaaaaaggctcggaaggcgagaactatcttcaccgacaaacaacttca agagctagaaaacacctttgagaagcagaagtacttgtctgttcaagataggatggagctggctcatcgaatggggctaa cagatactcaagtaaagacatggtatcaaaatagaagaaccaaatggaaacgacaagcctctgttggtatggatcttctt cacgatgctggaaatatggccgccgttcaacaacttctaagaacaaatccatattgggcaaactacttatcacagaacac ttcaatgtttggagcttctaataatcgccctgtattcaattcattagtcgtcccaacttcttcaatgattcctgctagca actctcaaaattctctactgcaatttctagcatcgcaaaacgtaaaagatgatatcagttccccaaaagaatcaccatca gtatctcctgattctgtaaaaaatgcatctgtttctaaaaaagaatcagatgaggatgaataa

tacctttccaccttgaagattgtttttttttcgcttagagtatttatccggttttcatcacgcaaaatgtcaaattc tcaatttctattgtttttctcttctatttttcctgctgagccactttaattttgccctcattctcaaaatccgatctctt aatttcttctgtaatgtttcactttcaatgtcttggttattataaaataataaaatgcaatacagtcaa

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Name of probe set: ceh-31

Probes designed on Mon, 01 Mar 10 12:53:42 -0700

48 probes designed for target of length 1098

Probe (5'->3'), Probe name, Probe number, Probe position, Percent GC

tagacagtagtttagtgtga, ceh-31_1, 1, 1, 35

aatagtcaaattgaatgact, ceh-31_2, 2, 23, 25

ccttatcagatgatgtaaca, ceh-31_3, 3, 59, 35

ccaacattgacattgttatg, ceh-31_4, 4, 83, 35

aggaatcagaaactgacgga, ceh-31_5, 5, 106, 45

tggtggggtctagaaagaat, ceh-31_6, 6, 128, 45

agaactctgagcagcaagtt, ceh-31_7, 7, 151, 45

taagtttatcttcgcgccac, ceh-31_8, 8, 175, 45

cagaaatgcgaaaagagctg, ceh-31_9, 9, 197, 45

tgtgaagttggatcaagcag, ceh-31_10, 10, 219, 45

atggatctggttcgttggtt, ceh-31_11, 11, 242, 45

gaggaattaatggaggtagg, ceh-31_12, 12, 264, 45

tctaggggatgatggcgatt, ceh-31_13, 13, 286, 50

tttcggtattcgggctccca, ceh-31_14, 14, 308, 55

gtcggactctcgttcacaga, ceh-31_15, 15, 330, 55

agccttttttgatcccacgc, ceh-31_16, 16, 352, 50

tgaagatagttctcgccttc, ceh-31_17, 17, 374, 45

agctcttgaagttgtttgtc, ceh-31_18, 18, 396, 40

ctgcttctcaaaggtgtttt, ceh-31_19, 19, 418, 40

tatcttgaacagacaagtac, ceh-31_20, 20, 440, 35

attcgatgagccagctccat, ceh-31_21, 21, 462, 50

tacttgagtatctgttagcc, ceh-31_22, 22, 484, 40

ggttcttctattttgatacc, ceh-31_23, 23, 511, 35

cagaggcttgtcgtttccat, ceh-31_24, 24, 533, 50

tcgtgaagaagatccatacc, ceh-31_25, 25, 555, 45

aacggcggccatatttccag, ceh-31_26, 26, 577, 55

ggatttgttcttagaagttg, ceh-31_27, 27, 600, 35

gtgataagtagtttgcccaa, ceh-31_28, 28, 623, 40

gctccaaacattgaagtgtt, ceh-31_29, 29, 645, 40

gaatacagggcgattattag, ceh-31_30, 30, 667, 40

aagttgggacgactaatgaa, ceh-31_31, 31, 689, 40

ttgctagcaggaatcattga, ceh-31_32, 32, 711, 40

ttgcagtagagaattttgag, ceh-31_33, 33, 733, 35

ttacgttttgcgatgctaga, ceh-31_34, 34, 755, 40

tttggggaactgatatcatc, ceh-31_35, 35, 777, 40

caggagatactgatggtgat, ceh-31_36, 36, 800, 45

acagatgcattttttacaga, ceh-31_37, 37, 822, 30

catcctcatctgattctttt, ceh-31_38, 38, 848, 35

cttcaaggtggaaaggtatt, ceh-31_39, 39, 871, 40

ctctaagcgaaaaaaaaaca, ceh-31_40, 40, 893, 30

gcgtgatgaaaaccggataa, ceh-31_41, 41, 916, 45

gaaattgagaatttgacatt, ceh-31_42, 42, 938, 25

gcaggaaaaatagaagagaa, ceh-31_43, 43, 966, 35

agggcaaaattaaagtggct, ceh-31_44, 44, 988, 40

aagagatcggattttgagaa, ceh-31_45, 45, 1010, 35

gtgaaacattacagaagaaa, ceh-31_46, 46, 1032, 30

tataataaccaagacattga, ceh-31_47, 47, 1054, 25

actgtattgcattttattat, ceh-31_48, 48, 1076, 20