User:Lindenb/Notebook/UMR915/20110714: Difference between revisions
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New page: {{PLNB|20110704|20110714}} #allonzenfan =playing with dbNSFP= <pre>curl -s "http://dl.dropbox.com/u/17001647/dbNSFP/dbNSFP1.1.chr1-22XY.zip" | funzip -t | head -n1 |tr " " "\n" | ca... |
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Revision as of 09:04, 14 July 2011
- allonzenfan
playing with dbNSFP
curl -s "http://dl.dropbox.com/u/17001647/dbNSFP/dbNSFP1.1.chr1-22XY.zip" | funzip -t | head -n1 |tr " " "\n" | cat -n
1 #chr
2 pos(1-based)
3 ref
4 alt
5 aaref
6 aaalt
7 hg19pos(1-based)
8 genename
9 geneid
10 CCDSid
11 refcodon
12 codonpos
13 fold-degenerate
14 aapos
15 cds_strand
16 LRT_Omega
17 PhyloP_score
18 PlyloP_pred
19 SIFT_score
20 SIFT_pred
21 Polyphen2_score
22 Polyphen2_pred
23 LRT_score
24 LRT_pred
25 MutationTaster_score
26 MutationTaster_pred
27 Ancestral_allele
28 UniSNP_ids
29 Allele_freq
30 Alt_gene_name
31 dbXrefs
32 Descriptive_gene_name
33 1000_genomes_high_coverage
34 1000_genomes_low_coverage
