Biomod/2013/Aarhus/Supplementary/Supplementary Data: Difference between revisions

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'''<sup>1</sup>H NMR and <sup>13</sup>C NMR of compound 7.'''
'''<sup>1</sup>H NMR and <sup>13</sup>C NMR of compound 7.'''


[[Image:Biomod_Aarhus_Chem_NMR_7H.png|900x900px|Center|thumb|<sup>1</sup>H NMR for compound '''7''']]
<html><A name="NMR7H"/></html> [[Image:Biomod_Aarhus_Chem_NMR_7H.png|900x900px|Center|thumb|<sup>1</sup>H NMR for compound '''7''']]
[[Image:Biomod_Aarhus_Chem_NMR_7C.png|900x900px|Center|thumb|<sup>13</sup>C NMR for compound '''7''']]
<html><A name="NMR7C"/></html> [[Image:Biomod_Aarhus_Chem_NMR_7C.png|900x900px|Center|thumb|<sup>13</sup>C NMR for compound '''7''']]


'''<sup>1</sup>H NMR and <sup>13</sup>C NMR of compound 8.'''
'''<sup>1</sup>H NMR and <sup>13</sup>C NMR of compound 8.'''


[[Image:Biomod_Aarhus_Chem_NMR_8H.png|900x900px|Center|thumb|<sup>1</sup>H NMR for compound '''8''']]
<html><A name="NMR8H"/></html> [[Image:Biomod_Aarhus_Chem_NMR_8H.png|900x900px|Center|thumb|<sup>1</sup>H NMR for compound '''8''']]
[[Image:Biomod_Aarhus_Chem_NMR_8C.png|900x900px|Center|thumb|<sup>13</sup>C NMR for compound '''8''']]
<html><A name="NMR8C"/></html> [[Image:Biomod_Aarhus_Chem_NMR_8C.png|900x900px|Center|thumb|<sup>13</sup>C NMR for compound '''8''']]


'''<sup>1</sup>H NMR, <sup>13</sup>C NMR and UV of compound 9.'''
'''<sup>1</sup>H NMR, <sup>13</sup>C NMR and UV of compound 9.'''


[[Image:Biomod_Aarhus_Chem_NMR_9H.png|900x900px|Center|thumb|<sup>1</sup>H NMR for compound '''9''']]
<html><A name="NMR9H"/></html> [[Image:Biomod_Aarhus_Chem_NMR_9H.png|900x900px|Center|thumb|<sup>1</sup>H NMR for compound '''9''']]
[[Image:Biomod_Aarhus_Chem_NMR_9C.png|900x900px|Center|thumb|<sup>13</sup>C NMR for compound '''9''']]
<html><A name="NMR9C"/></html> [[Image:Biomod_Aarhus_Chem_NMR_9C.png|900x900px|Center|thumb|<sup>13</sup>C NMR for compound '''9''']]
[[Image:Biomod_Aarhus_Chem_10UV.png|900x900px|Center|UV for compound '''9''']]
<html><A name="9UV"/></html> [[Image:Biomod_Aarhus_Chem_10UV.png|900x900px|Center|UV for compound '''9''']]




'''<sup>1</sup>H NMR, <sup>13</sup>C NMR and UV of compound 10.'''
'''<sup>1</sup>H NMR, <sup>13</sup>C NMR and UV of compound 10.'''


[[Image:Biomod_Aarhus_Chem_NMR_10H.png|900x900px|Center|thumb|<sup>1</sup>H NMR for compound '''10''']]
<html><A name="NMR10H"/></html> [[Image:Biomod_Aarhus_Chem_NMR_10H.png|900x900px|Center|thumb|<sup>1</sup>H NMR for compound '''10''']]
[[Image:Biomod_Aarhus_Chem_NMR_10C.png|900x900px|Center|thumb|<sup>13</sup>C NMR for compound '''10''']]
<html><A name="NMR10C"/></html> [[Image:Biomod_Aarhus_Chem_NMR_10C.png|900x900px|Center|thumb|<sup>13</sup>C NMR for compound '''10''']]
[[Image:Biomod_Aarhus_Chem_11UV.png|900x900px|Center|UV for compound '''10''']]
<html><A name="10UV"/></html> [[Image:Biomod_Aarhus_Chem_11UV.png|900x900px|Center|UV for compound '''10''']]




'''<sup>1</sup>H NMR and <sup>13</sup>C NMR of compound 11.'''
'''<sup>1</sup>H NMR and <sup>13</sup>C NMR of compound 11.'''


[[Image:Biomod_Aarhus_Chem_NMR_11H.png|900x900px|Center|thumb|<sup>1</sup>H NMR for compound '''11''']]
<html><A name="NMR11H"/></html> [[Image:Biomod_Aarhus_Chem_NMR_11H.png|900x900px|Center|thumb|<sup>1</sup>H NMR for compound '''11''']]
[[Image:Biomod_Aarhus_Chem_NMR_11C.png|900x900px|Center|thumb|<sup>13</sup>C NMR for compound '''11''']]
<html><A name="NMR11C"/></html> [[Image:Biomod_Aarhus_Chem_NMR_11C.png|900x900px|Center|thumb|<sup>13</sup>C NMR for compound '''11''']]




'''<sup>1</sup>H NMR and <sup>13</sup>C NMR of compound 12.'''
'''<sup>1</sup>H NMR and <sup>13</sup>C NMR of compound 12.'''


[[Image:Biomod_Aarhus_Chem_NMR_12H.png|900x900px|Center|thumb|<sup>1</sup>H NMR for compound '''12''']]
<html><A name="NMR12H"/></html> [[Image:Biomod_Aarhus_Chem_NMR_12H.png|900x900px|Center|thumb|<sup>1</sup>H NMR for compound '''12''']]
[[Image:Biomod_Aarhus_Chem_NMR_12C.png|900x900px|Center|thumb|<sup>13</sup>C NMR for compound '''12''']]
<html><A name="NMR12C"/></html> [[Image:Biomod_Aarhus_Chem_NMR_12C.png|900x900px|Center|thumb|<sup>13</sup>C NMR for compound '''12''']]


===5-propargylamino-ddUTP===
===5-propargylamino-ddUTP===

Revision as of 09:52, 25 October 2013

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[<a href="http://openwetware.org/index.php?title=Biomod/2013/Aarhus/</html>Supplementary/Supplementary Data<html>&action=edit">edit this page</a>]

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Supplementary data

Origami design

Table S1. Details of the different modules of the plate.
Table S2. Details of the dome structure.
Table S3.Details of the different modules.

sisiRNA

Yields of RP-HPLC purifications of the modified strands

Table S4: Yields of RP-HPLC purifications of the 12 modified strands.

Estimated yields of the annealing reactions

Table S5. Estimated yields of the annealing reactions.

Luciferase knockdown with all singly modified duplexes

Fig. S1. Cell viability corrected luciferase activities for all singly modified duplexes, transfected with Lipofectamine. Click on the image and choose 'high resolution' for details.

Table S6. Best fit IC50 values of all knockdown experiments using singly modified duplexes using Lipofectamine.The IC50 value for W179-PEG1K was calculated with a low R2 value and is not conclusive.

Fig. S2. Luciferase and MTT measurements of all knockdown experiments with singly modified duplexes using Lipofectamine.

System in action

Radioactive labeling of W376

Fig. S3. 1) 25 bp DNA ladder, 2) 6 µL labeled W376, 3) 1 pmol W376, 4) 1.5 pmol W376, 5) pmol W376, 6) 2.5 pmol W376, 7) pmol W376.

The band containing the labeled sample appears most similar to that in lane 4 which means that the 6 µL that were run on the gel contained 1.5 pmol W376, corresponding to a concentration of 0.25 µM in the purified sample.

Cholesterol

1H NMR, 13C NMR and IR of compound 4.

<html><A name="NMR4H"/></html>
1H NMR for compound 4
<html><A name="NMR4C"/></html>
13C NMR for compound 4
Zoom of 13C NMR for compound 4
<html><A name="IR4"/></html>
IR for compound 4

1H NMR, 13C NMR and IR of compound 5.

<html><A name="NMR5H"/></html>
1H NMR for compound 5
<html><A name="NMR5C"/></html>
13C NMR for compound 5
Zoom of 13C NMR for compound 5
<html><A name="IR5"/></html>
IR for compound 5

1H NMR and 13C NMR of compound 6.

<html><A name="NMR6H"/></html>
1H NMR for compound 6
<html><A name="NMR6C"/></html>
13C NMR for compound 6
Zoom of 13C NMR for compound 6

Photosensitizer

1H NMR and 13C NMR of compound 7.

<html><A name="NMR7H"/></html>
1H NMR for compound 7
<html><A name="NMR7C"/></html>
13C NMR for compound 7

1H NMR and 13C NMR of compound 8.

<html><A name="NMR8H"/></html>
1H NMR for compound 8
<html><A name="NMR8C"/></html>
13C NMR for compound 8

1H NMR, 13C NMR and UV of compound 9.

<html><A name="NMR9H"/></html>
1H NMR for compound 9
<html><A name="NMR9C"/></html>
13C NMR for compound 9

<html><A name="9UV"/></html> UV for compound 9


1H NMR, 13C NMR and UV of compound 10.

<html><A name="NMR10H"/></html>
1H NMR for compound 10
<html><A name="NMR10C"/></html>
13C NMR for compound 10

<html><A name="10UV"/></html> UV for compound 10


1H NMR and 13C NMR of compound 11.

<html><A name="NMR11H"/></html>
1H NMR for compound 11
<html><A name="NMR11C"/></html>
13C NMR for compound 11


1H NMR and 13C NMR of compound 12.

<html><A name="NMR12H"/></html>
1H NMR for compound 12
<html><A name="NMR12C"/></html>
13C NMR for compound 12

5-propargylamino-ddUTP

1H NMR, 13C NMR and IR for compound 15.

1H NMR for compound 15
zoom of 1H NMR for compound 15
13C NMR for compound 15
IR for compound 15

1H NMR, 13C NMR and IR for compound 16.

1H NMR for compound 16
zoom of 1H NMR for compound 16
13C NMR for compound 16
IR for compound 16

1H NMR, 13C NMR and IR for compound 17.

1H NMR for compound 17
zoom of 1H NMR for compound 17
13C NMR for compound 17
IR for compound 17

1H NMR, 13C NMR and IR for compound 18.

1H NMR for compound 18
zoom of 1H NMR for compound 18
13C NMR for compound 18
IR for compound 18

1H NMR and 19F NMR for compound 19.

1H NMR for compound 19
19F NMR for compound 19

1H NMR and 19F NMR for compound 21.

1H NMR for compound 21
19F NMR for compound 21

Peptide lock

Spectra

(S)-2-((tert-butoxycarbonyl)amino)-5-methoxy-5-oxopentanoic acid

1H NMR

1H NMR of (S)-2-((tert-butoxycarbonyl)amino)-5-methoxy-5-oxopentanoic acid

13C NMR

13C NMR of (S)-2-((tert-butoxycarbonyl)amino)-5-methoxy-5-oxopentanoic acid




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