User:Jarle Pahr/Algorithms

Notes on algorithms with use in bioinformatics and computational biology:

See also:

http://bix.ucsd.edu/bioalgorithms/

http://en.wikipedia.org/wiki/Category:Bioinformatics_algorithms

https://www.coursera.org/course/bioinformatics

Simplex algorithm:

Needleman–Wunsch algorithm:

http://en.wikipedia.org/wiki/Needleman%E2%80%93Wunsch_algorithm

Smith Waterman algorithm:

http://en.wikipedia.org/wiki/Smith%E2%80%93Waterman_algorithm

See also http://seqanswers.com/forums/showthread.php?t=25305 for a discussion on implementing SW.

Burrows-Wheeler transform:

Misc:

http://www.cse.sc.edu/~maxal/csce590b/Lect01-02.pdf

http://bioinf.me/sites/default/files/share/An%20Introduction%20to%20Bioinformatics%20Algorithms%20-%20Jones,%20Pevzner.pdf