Talk:20.109(S14):Phylogenetic and primer analyses (Day7)

T/R microbiota

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Team Color	Team Member	Gull ID	Sequence 1 (txt)	Sequence 2 (txt)	Sequence 3 (txt)	Sequence 4 (txt)	Sequence 5 (txt)	Sequence 6 (txt)	Sequence 7 (txt)	Sequence 8 (txt)	Species overview (xlsx)	Alignment (mas)	Tree (pdf)
Red	AK	308	Media:TRRed308C1.txt		Media:TRRed308C3.txt	Media:TRRed308C4.txt		Media:TRRed308C6.txt		Media:TRRed308C8.txt	Media:TRRed308.xls
Red	LT	308		Media:TRRed308C2B.txt	Media:TRRed308C3B.txt	Media:TRRed308C4B.txt	Media:TRRed308C5B.txt	Media:TRRed308C6B.txt		Media:TRRed308C8B.txt	Media:TRRed308.xls
All	SKH	308		Media:TRRed308C2star.txt	Media:TRRed308C3star.txt	Media:TRRed308C4star.txt					Media:TRRed308star.xlsx
Orange	CT-Q	312	Media:TROrange312C1.txt	Media:TROrange312C2.txt	Media:TROrange312C3.txt						Media:TROrange312.xlsx
Orange	AN	308		Media: TROrange308AC2.txt	Media: TROrange308AC3.txt	Media: TROrange308AC4.txt	Media: TROrange308AC5.txt				Media: TROrange308AC.xlsx
Yellow	REDO	312		Media: 312-2.txt	Media: 312-4.txt	Media: 312-5.txt	Media: 312-7.txt	Media: 312-10.txt			Media: 312-REDO-samples.xlsx
Yellow	SW	312	Media: TRYellow312C1b.txt	Media: TRYellow312C2.txt	Media: TRYellow312C2b.txt			Media: TRYellow312C6B.txt			Media: TRYellow312.xlsx
Green	CB	304	Media: TRGreen304C1.txt	Media: TRGreen304C2.txt					Media: TRGreen304C7R_R.txt		Media: TRGreen304CB.xlsx	Media: TR-304-Alignment.mas	Media: TR-304-Tree.pdf
Green	CR	304			Media: TRGreen304C11.txt	Media: TRGreen304C12.txt	Media: TRGreen304C13.txt	Media: TRGreen304C14F.txt	Media: TRGreen304C15.txt		Media: TRGreen304CR.xlsx	Media: TR-304-Alignment.mas	Media: TR-304-Tree.pdf
Blue	KT	304			Media: TRBlue304C3.txt							Media: TR-304-Alignment.mas	Media: TR-304-Tree.pdf
Blue	MG	252	(see Pink)									Media: TR-252-Aligment-partial.mas	Media: TR-252-Tree-partial.pdf
Pink	RCB	252	Media: TRPink252C1.txt		Media: TRPink252C3.txt		Media: TRPink252C5.txt				Media: TR252Excel.xlsx
Pink	HMH / MG	252			Media: TRPink252C3B.txt	Media: TRPink252C4B.txt	Media: TRPink252C5B.txt	Media: TRPink252C6B.txt

W/F microbiota

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Team Color	Team Member	Gull ID	Sequence 1 (txt)	Sequence 2 (txt)	Sequence 3 (txt)	Sequence 4 (txt)	Sequence 5 (txt)	Sequence 6 (txt)	Sequence 7 (txt)	Sequence 8 (txt)	Species overview (xlsx)	Alignment (mas)	Tree (pdf)
Red
Orange
Orange
Yellow
Yellow
Green
Green
Blue
Blue					Media:WFBlue274C3.txt		Media:WFBlue274C5.txt
Pink
Pink
Purple
Purple
Silver	MO	252		Media:WFSilver252C2.txt	Media:WFSilver252C5.txt
Silver	SW	252		Media:WFSilver252C3.txt	Media:WFSilver252C1.txt
White
White	CTC	260						Media:WFWhite290C14.txt			Media:WFwhite260.xlsx	See above row

T/R microsporidia gels

Gel number	Reference samples	Group 1	Group 2	Picture
T/R 1	Specificity (VC, EH, mixture)	Orange	Yellow	Media:TR1.BMP
T/R 2	Specificity (VC, EH, mixture)	Blue	W/F Green	Media:TR2.BMP
T/R 3	Sensitivity (EH: lo, mid, hi)	Red	Green
T/R 4	Sensitivity (EH: lo, mid, hi)	Pink	Blue

W/F microsporidia gels

Gel number	Reference samples	Group 1	Group 2	Picture
W/F 1	Specificity (VC, EH, mixture)	Blue	Purple
W/F 2	Specificity (VC, EH, mixture)	Silver	White
W/F 3	Sensitivity (EH: lo, mid, hi)	Red	Orange
W/F 4	Sensitivity (EH: lo, mid, hi)	Yellow	Pink