20.109(S08):Start-up biomaterials engineering (Day1): Difference between revisions

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==Introduction/Protocols==
==Introduction==


Today we will continue the discussion that we began in lecture about cell-biomaterial interactions and cartilage tissue engineering, with the ultimate goal of designing an experiment probing chondrocyte phenotype maintenance.  
Today we will continue the discussion that we began in lecture about cell-biomaterial interactions and cartilage tissue engineering, with the ultimate goal of designing an experiment probing chondrocyte phenotype maintenance.  
==Protocols==
===Part 1: Experiment design===
[a little more preface now?]


Each pair of you will test three <font color = red>(?4 would be too many?)</font color> samples. One of these samples must be cells grown in monolayer culture. The other two samples will be grown in 3D alginate bead culture, and should have one parameter varied between them. For example, you might try changing the mechanical properties of the beads (how would you do this?), or the cell density within the beads. Be as creative as you like! If your protocol requires a new reagent to be ordered, we will do our best to get it in time. Of course, two samples is not very many for determining a trend. You are more than welcome to join up with another group or two in order to expand the range of the parameter you are testing (e.g., testing four cell densities instead of two). If everyone wants to test something different, that’s okay too.  
Each pair of you will test three <font color = red>(?4 would be too many?)</font color> samples. One of these samples must be cells grown in monolayer culture. The other two samples will be grown in 3D alginate bead culture, and should have one parameter varied between them. For example, you might try changing the mechanical properties of the beads (how would you do this?), or the cell density within the beads. Be as creative as you like! If your protocol requires a new reagent to be ordered, we will do our best to get it in time. Of course, two samples is not very many for determining a trend. You are more than welcome to join up with another group or two in order to expand the range of the parameter you are testing (e.g., testing four cell densities instead of two). If everyone wants to test something different, that’s okay too.  
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Once you have decided on a plan, please tell the teaching faculty how many cells you need to initiate your cultures, in case extra animal tissue needs to be ordered. Per sample, you will need to make two cultures (one for viability testing, one for transcript/protein analysis), so please multiply your original number by two.
Once you have decided on a plan, please tell the teaching faculty how many cells you need to initiate your cultures, in case extra animal tissue needs to be ordered. Per sample, you will need to make two cultures (one for viability testing, one for transcript/protein analysis), so please multiply your original number by two.


You can use any remaining time today to begin working on your essay and/or research proposal. <font color = red>(Make expected map!)</font color>
====Some guidelines for 2D culture====
 
In my experience culturing primary chondrocytes, if you originally plate 600,000 cells in a T25 flask, they will be ready to be split in about 4 days. Once culture is established, cells that are split at 1:10 may become confluent again in 3-6 days, depending on how many times they have been split already (fibroblast-like cells grow more quickly than chondrocyte-like cells).


===Some guidelines for 2D culture===
===Part 2: Begin writing assignment===


In my experience culturing primary chondrocytes, if you originally plate 600,000 cells in a T25 flask, they will be ready to be split in about 4 days. Once culture is established, cells that are split at 1:10 may become confluent again in 3-6 days, depending on how many times they have been split already (fibroblast-like cells grow more quickly than chondrocyte-like cells).
You can use any remaining time today to start thinking about your [[20.109(S08):Essay|essay]]. Our writing instructor Neal Lerner will guide you through beginning this process.


==For next time==
==For next time==

Revision as of 14:58, 30 January 2008


20.109(S08): Laboratory Fundamentals of Biological Engineering

Home        People        Schedule Spring 2008        Assignments        Lab Basics        OWW Basics       
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Introduction

Today we will continue the discussion that we began in lecture about cell-biomaterial interactions and cartilage tissue engineering, with the ultimate goal of designing an experiment probing chondrocyte phenotype maintenance.

Protocols

Part 1: Experiment design

[a little more preface now?]

Each pair of you will test three (?4 would be too many?) samples. One of these samples must be cells grown in monolayer culture. The other two samples will be grown in 3D alginate bead culture, and should have one parameter varied between them. For example, you might try changing the mechanical properties of the beads (how would you do this?), or the cell density within the beads. Be as creative as you like! If your protocol requires a new reagent to be ordered, we will do our best to get it in time. Of course, two samples is not very many for determining a trend. You are more than welcome to join up with another group or two in order to expand the range of the parameter you are testing (e.g., testing four cell densities instead of two). If everyone wants to test something different, that’s okay too.

In addition to designing your 3D culture experiment, you will have a chance to influence how your 2D samples are cultured. Recall from lecture that chondrocytes grown in monolayer de-differentiate to a fibroblastic phenotype over time. This is affected by several factors, including the frequency with which the cells are split. You should recommend a plan for splitting your cells, which will be carried out by the teaching faculty as closely as possible. In total, you will culture your cells for 13 days. If you collaborated with another group in designing your 3D experiment, you should agree upon the same culture conditions for your monolayer-grown cells as well. In this case, we can use the 2D culture results as a (very incomplete) reference point for how similar your culture techniques are.

Once you have decided on a plan, please tell the teaching faculty how many cells you need to initiate your cultures, in case extra animal tissue needs to be ordered. Per sample, you will need to make two cultures (one for viability testing, one for transcript/protein analysis), so please multiply your original number by two.

Some guidelines for 2D culture

In my experience culturing primary chondrocytes, if you originally plate 600,000 cells in a T25 flask, they will be ready to be split in about 4 days. Once culture is established, cells that are split at 1:10 may become confluent again in 3-6 days, depending on how many times they have been split already (fibroblast-like cells grow more quickly than chondrocyte-like cells).

Part 2: Begin writing assignment

You can use any remaining time today to start thinking about your essay. Our writing instructor Neal Lerner will guide you through beginning this process.

For next time