20.109(F10): Fall 2010 schedule

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| JG
| JG
|[[20.109(F10): Mod 1 Day 2 Clean and cut DNA | Clean and cut DNA]]
|[[20.109(F10): Mod 1 Day 2 Clean and cut DNA | Clean and cut DNA]]
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| Neal/Linda/Atissa visit lab<br> [[Media:BE109 Fall10 Mod1 Day2 Michelle.pdf| M1D2 lecture handout]]<br>[[Image:20.109(F10) M1D2 labtalk.pdf | M1D2 lab talk]]
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| Neal/Linda/Atissa visit lab[[Media:Intro Slides 20 109 Sept 2010.pdf| their slides are here]]<br> [[Media:BE109 Fall10 Mod1 Day2 Michelle.pdf| M1D2 lecture handout]]<br>[[Media:20.109(F10) M1D2 labtalk.pdf | M1D2 lab talk]]
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|--
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| 1
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| JG
| JG
| [[20.109(F10): Mod 1 Day 3 Agarose gel electrophoresis| Agarose gel electrophoresis]]
| [[20.109(F10): Mod 1 Day 3 Agarose gel electrophoresis| Agarose gel electrophoresis]]
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|  
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| [[Media:20.109(F10) M1D3 lecture.pdf| NK M1D3 lecture]] and [[Media:BRCA 20 109.pdf| DW M1D3 lecture]] and [[Media:20.109(F10) M1D3 labtalk.pdf| M1D3 lab talk]]
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| JG
| JG
| [[20.109(F10): Mod 1 Day 4 DNA ligations and bacterial transformations| DNA ligation and bacterial transformation]]
| [[20.109(F10): Mod 1 Day 4 DNA ligations and bacterial transformations| DNA ligation and bacterial transformation]]
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|  
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| [[Media:20.109(F10) M1D4 lecture.pdf| M1D4 lecture slides]]<br> [[Media:20.109(F10) M1D4 labtalk.pdf| M1D4 lab lecture]]
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| JG
| JG
| [[20.109(F10): Mod 1 Day 5 Examine candidate clones| Examine candidate clones]]
| [[20.109(F10): Mod 1 Day 5 Examine candidate clones| Examine candidate clones]]
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| EHS visits lab<br>
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| [[Media:20.109(F10) M1D5 lecture.pdf| M1D5 lecture slides]]<br> [[Media:20.109(F10) M1D5labtalk.pdf| M1D5 lab lecture]]<br>[[Media:BE GEN BIO.pdf| EHS visits lab]]<br>
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| JG
| JG
| [[20.109(F10): Mod 1 Day 6 Restriction map and tissue culture | Restriction map and tissue culture]]
| [[20.109(F10): Mod 1 Day 6 Restriction map and tissue culture | Restriction map and tissue culture]]
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| Neal/Linda visit lab for peer review exercise<br>  
+
| [[Media:20.109(F10) M1D6 lecture.pdf| M1D6 lecture slides]]<br> [[Media:20.109(F10) M1D6 labtalk.pdf| M1D6 lab lecture]]<br> Neal/Linda visit lab for peer review exercise<br>  
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| JG
| JG
| [[20.109(F10): Mod 1 Day 7 Lipofection| Lipofection]]
| [[20.109(F10): Mod 1 Day 7 Lipofection| Lipofection]]
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| '''[[20.109(F10):DNA engineering "Progress Report"| Mod 1 "progress report"]] due by 11AM today''' <br>
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| '''[[20.109(F10):DNA engineering "Progress Report"| Mod 1 "progress report"]] due by 11AM today''' <br>[[Media:20.109(F10) M1D7 lecture.pdf| M1D7 lecture slides]][[Media:BackgroundPapers Stats.pdf| and stats papers]]<br>[[Media:20.109(F10) M1D7 labtalk.ppt| M1D7 lab talk]]<br>[[Media:20.109(F10) M1D7 109StatsExercises.pptx | M1D7 lab stats talk pptx]][[Media:20.109(F10) M1D7 109StatsExercises.pdf| and as pdf]]
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| JG
| [[20.109(F10): Mod 1 Day 8 FACS analysis| FACS analysis]]
| [[20.109(F10): Mod 1 Day 8 FACS analysis| FACS analysis]]
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|  
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| [[Media:20.109(F10) M1D8 lecture.pdf| M1D8 lecture slides]]
|--
|--
| colspan="7" |
| colspan="7" |
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|
! colspan="4" | Columbus Day Break Monday Oct 11
! colspan="4" | Columbus Day Break Monday Oct 11
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| '''No lab Tuesday, but [[20.109(F10):DNA engineering "P3"| Mod 1 "P3"]] is due by 11AM 10.12.10'''
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| '''No lab Tuesday, but [[20.109(F10):DNA engineering "P3"| Mod 1 "P3"]] is due by 11AM 10.13.10'''
|--
|--
| colspan="7" |
| colspan="7" |
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| [[User: Mark B. Smith| MS]]
| [[User: Mark B. Smith| MS]]
| [[20.109(F10): Mod 2 Day 1 Testing an engineered biological system| Testing an engineered biological system]]
| [[20.109(F10): Mod 2 Day 1 Testing an engineered biological system| Testing an engineered biological system]]
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|  
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| [[Media:20.109(F10) M2D1 Handout.pdf| M2D1 lecture handout]]<br>[[Media:20.109(F10) M1D1 LabTalk.pptx| M2D1 lab slides]]
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| [[User: Mark B. Smith| MS]]
| [[User: Mark B. Smith| MS]]
| [[20.109(F10): Mod 2 Day 2 Measuring system performance | Measuring System Performance]]
| [[20.109(F10): Mod 2 Day 2 Measuring system performance | Measuring System Performance]]
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|  
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| [[Media:20.109(F10) M2D2 handout.pdf| M2D2 lecture handout]] <br> [[Media:20.109(F10) M2D2 labtalk.pptx| M2D2 lab slides]]
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| [[User: Mark B. Smith| MS]]
| [[User: Mark B. Smith| MS]]
| [[20.109(F10): Mod 2 Day 3 Tools for system engineering | Tools for System Engineering]]
| [[20.109(F10): Mod 2 Day 3 Tools for system engineering | Tools for System Engineering]]
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|  
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| [[Media:20.109(F10) M2D3 handout.pdf| M2D3 lecture handout]]<br> [[Media:20.109(F10) M2D3 labtalk.pptx| M2D3 lab slides]]
|--
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| [[User: Mark B. Smith| MS]]
| [[User: Mark B. Smith| MS]]
| [[20.109(F10): Journal Club I| Journal Club I]]
| [[20.109(F10): Journal Club I| Journal Club I]]
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| We'll be starting this day in the lab so meet in 56-322
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| We'll be having lecture at the regular time/place and then meeting in the lab for a few minutes starting at 1.
|-
|-
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| [[User: Mark B. Smith| MS]]
| [[User: Mark B. Smith| MS]]
| [[20.109(F10): Mod 2 Day 5 Assessing re-tuned system | Assessing re-tuned system]]
| [[20.109(F10): Mod 2 Day 5 Assessing re-tuned system | Assessing re-tuned system]]
-
|  
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| Neal and Linda visit lab for IMRD training<br>[[Media:20.109(F10) M2D5 handout.pdf| M2D5 lecture handout]]
|--
|--
| 2
| 2
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| [[User: Mark B. Smith| MS]]
| [[User: Mark B. Smith| MS]]
| [[20.109(F10): Mod 2 Day 6 Readouts of DNA, Protein | Readout: DNA]]
| [[20.109(F10): Mod 2 Day 6 Readouts of DNA, Protein | Readout: DNA]]
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|
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| [[Media:20.109(F10) M2D6 handout.pdf| M2D6 lecture handout]]
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| 2
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| [[User: Mark B. Smith| MS]]
| [[User: Mark B. Smith| MS]]
| [[20.109(F10): Mod 2 Day 7 Readout of Protein | Readout: Protein]]
| [[20.109(F10): Mod 2 Day 7 Readout of Protein | Readout: Protein]]
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| Bring your writing and your questions by the lab as needed
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| [[Media:20.109(F10) M2D7 handout.pdf| M2D7 lecture handout]]<br>Bring your writing and your questions by the lab as needed
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| 2
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! colspan="4" | Veteran's Day Break Thurs Nov 11  
! colspan="4" | Veteran's Day Break Thurs Nov 11  
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| '''[[20.109(F10): System engineering research article| Mod 2 research article]] is due by 11AM 11.11.10 <br>'''
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| '''[[20.109(F10): System engineering research article| Mod 2 research article]] is due by 11:59PM on 11.11.10 <br>'''
|--
|--
| colspan="7" |
| colspan="7" |
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| [[User: JCasey4| JC]]
| [[User: JCasey4| JC]]
| [[20.109(F10): Mod 3 Day 1 Growth of phage materials| Growth of phage materials]]
| [[20.109(F10): Mod 3 Day 1 Growth of phage materials| Growth of phage materials]]
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|  
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| [[Media:20.109(F10) M3D1 lablecture.pptx| M3D1 lab lecture]]
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| [[User: JCasey4| JC]]
| [[User: JCasey4| JC]]
| [[20.109(F10): Mod 3 Day 4 Battery assembly| Battery assembly]]
| [[20.109(F10): Mod 3 Day 4 Battery assembly| Battery assembly]]
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| Atissa will visit lab to offer tips for giving talks with a partner<br>
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| [[Media:20.109 Battery Lecture, 30NOV10.pptx| John's lecture slides]]<br>[[Media:20.109(F10) M3D4 lab.pdf| M3D4 lab lecture]]<br>Atissa will visit lab @4PM to offer tips for giving talks with a partner<br>
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| 3
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|  
|  
| end of term celebration...
| end of term celebration...
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| Lecture for class evaluations then lunch from noon-1:30 PM, no lab
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| Lecture for class evaluations then lunch from 11:30-1 PM, 56-614, no lab
|}
|}
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Current revision

20.109(F10): Laboratory Fundamentals of Biological Engineering

Home        People        Schedule Fall 2010        Assignments        Lab Basics        OWW Basics       
DNA Engineering        System Engineering        Biomaterials Engineering              

MODULE DAY DATE LECTURER TA LAB note
Thur Sept 9 NK Orientation Orientation Handout Fall 2010
1 1 Tue Sept 14 NK and MSJ JG DNA engineering using PCR M1D1 lecture handout
M1D1 lab talk
1 2 Thur Sept 16 MSJ JG Clean and cut DNA Neal/Linda/Atissa visit lab their slides are here
M1D2 lecture handout
M1D2 lab talk
1 3 Tue Sept 21 NK and DW JG Agarose gel electrophoresis NK M1D3 lecture and DW M1D3 lecture and M1D3 lab talk
1 4 Thur Sept 23 OK JG DNA ligation and bacterial transformation M1D4 lecture slides
M1D4 lab lecture
1 5 Tue Sept 28 OK JG Examine candidate clones M1D5 lecture slides
M1D5 lab lecture
EHS visits lab
1 6 Thur Sept 30 OK JG Restriction map and tissue culture M1D6 lecture slides
M1D6 lab lecture
Neal/Linda visit lab for peer review exercise
1 7 Tue Oct 5 DW JG Lipofection Mod 1 "progress report" due by 11AM today
M1D7 lecture slides and stats papers
M1D7 lab talk
M1D7 lab stats talk pptx and as pdf
1 8 Thur Oct 7 DW JG FACS analysis M1D8 lecture slides
Columbus Day Break Monday Oct 11 No lab Tuesday, but Mod 1 "P3" is due by 11AM 10.13.10
2 1 Thurs Oct 14 NK MS Testing an engineered biological system M2D1 lecture handout
M2D1 lab slides
2 2 Tues Oct 19 NK MS Measuring System Performance M2D2 lecture handout
M2D2 lab slides
2 3 Thurs Oct 21 NK MS Tools for System Engineering M2D3 lecture handout
M2D3 lab slides
2 4 Tues Oct 26 Journal Club MS Journal Club I We'll be having lecture at the regular time/place and then meeting in the lab for a few minutes starting at 1.
2 5 Thurs Oct 28 NK MS Assessing re-tuned system Neal and Linda visit lab for IMRD training
M2D5 lecture handout
2 6 Tues Nov 2 NK MS Readout: DNA M2D6 lecture handout
2 7 Thurs Nov 4 NK MS Readout: Protein M2D7 lecture handout
Bring your writing and your questions by the lab as needed
2 8 Tues Nov 9 Journal Club MS Journal Club II
Veteran's Day Break Thurs Nov 11 Mod 2 research article is due by 11:59PM on 11.11.10
3 1 Tues Nov 16 AB JC Growth of phage materials M3D1 lab lecture
3 2 Thurs Nov 18 AB JC Phage nanowires
3 3 Tues Nov 23 AB JC TEM
Thanksgiving Break Nov 25, 26 No lab or lecture
3 4 Tues Nov 30 AB JC Battery assembly John's lecture slides
M3D4 lab lecture
Atissa will visit lab @4PM to offer tips for giving talks with a partner
3 5 Thurs Dec 2 AB JC Battery testing
3 6 Tues Dec 7 AB JC Research proposal presentations We'll start this day in lab, 56-322, to finish off the BioMaterials module
Thurs Dec 9 end of term celebration... Lecture for class evaluations then lunch from 11:30-1 PM, 56-614, no lab
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