20.109(S13): Assignments

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(New page: {{Template:20.109(S13)}} <div style="padding: 10px; width: 640px; border: 5px solid #99FF66;"> ==Overview== You will perform three series of experiments (hereafter “modules”) over ...)
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You will perform three series of experiments (hereafter “modules”) over the course of the semester. The modules differ in both conceptual and technical content, and in the ways that your learning will be assessed. Links to the experiments and assignments are provided below.
You will perform three series of experiments (hereafter “modules”) over the course of the semester. The modules differ in both conceptual and technical content, and in the ways that your learning will be assessed. Links to the experiments and assignments are provided below.
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Although your lab work will be done in pairs, <font color = CC0000>'''you must submit individual written work (for both daily homeworks and major assignments) unless otherwise specified and also give individual journal club presentations'''</font color>. You will close out the course by developing and presenting a novel research idea as a two-person team. Please read the 20.109 [[20.109(S13):Statement on collaboration and integrity | statement on collaboration and integrity]] for more detail about academic honesty in our class. You are encouraged to ask the teaching faculty any questions you have about what constitutes collaboration, plagiarism, etc.
+
Although your lab work will be done in pairs, <font color = CC0000>'''most assignments will be submitted individually (as summarized below) and should reflect your personal understanding.'''</font color> Please read the 20.109 [[20.109(S13):Statement on collaboration and integrity | '''statement on collaboration and integrity''']] for more detail about academic honesty in our class. You are encouraged to ask the teaching faculty any questions you have about what constitutes appropriate collaboration.
-
We appreciate that time management can be a difficult skill to develop, and that learning takes place on many time-scales. However, assignments being turned in at wildly disparate times creates additional logistical burdens for the teaching faculty. <font color= CC0000><b>Therefore, late work (both daily and culminating assignments) will be penalized 1/3 of a letter grade for each day late and will not be accepted after a week.</b></font color> We strongly recommend that you plan ahead and space out your work when possible.
+
*Individual assignments (60% of grade): all lab notebooks, quizzes, and homeworks (unless otherwise noted in directions); Module 1 primer design summary and journal club presentation; Module 2 research article.
 +
*Team assignments (40% of grade): Module 1 laboratory report (draft and revision), Module 3 data summary, and Module 3 research proposal.
 +
 
 +
We appreciate that time management can be a difficult skill to develop, and that learning takes place on many time-scales. However, assignments turned in at wildly disparate times create additional logistical burdens for the teaching faculty. <font color= CC0000><b>Therefore, late work (both daily and culminating assignments) will be penalized 1/3 of a letter grade for each day late and will not be accepted after a week.</b></font color> We strongly recommend that you plan ahead and space out your work when possible.
We will endeavor to provide equal access to subject 20.109 for students with disabilities, in accordance with the Americans with Disabilities Act (ADA) of 1990. Please see the teaching faculty as soon as possible regarding needed accommodations.
We will endeavor to provide equal access to subject 20.109 for students with disabilities, in accordance with the Americans with Disabilities Act (ADA) of 1990. Please see the teaching faculty as soon as possible regarding needed accommodations.
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|[[20.109%28S13%29:Module_1 | DNA Engineering]]
|[[20.109%28S13%29:Module_1 | DNA Engineering]]
|Laboratory report
|Laboratory report
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|15?
+
|15
|[[20.109(S13): DNA engineering report | Assignment description]]
|[[20.109(S13): DNA engineering report | Assignment description]]
|-
|-
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|  
|  
| Primer design summary
| Primer design summary
-
| 5?
+
| 5
-
|  
+
|[[20.109(S13): Primer design summary | Assignment description]]
|-
|-
|  
|  
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| Journal club presentation
| Journal club presentation
| 10
| 10
-
|[[20.109%28S13%29:Journal_club_%28Day8%29 | Sign-up for article]]<br>[[Media: 20109_Rubric-Oral-Jclub_S12.pdf| Evaluation rubric (PDF download)]]
+
|[[20.109%28S13%29:Journal_club_II_%28Day8%29 | Sign-up for article]]<br>[[Media: 20109_Rubric-Oral-Jclub_S12.pdf| Evaluation rubric (PDF download)]]
|-
|-
| 2
| 2
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| Research idea presentation
| Research idea presentation
| 20
| 20
-
|[[20.109%28S13%29:Module_3_oral_presentations | Assignment description]]<br>[[Media: 20109_Rubric-Oral-Proposal-S13.pdf | Evaluation rubric (PDF download)]]
+
|[[20.109%28S13%29:Module_3_oral_presentations | Assignment description]]<br>[[Media: 20109_Rubric-Oral-Proposal-S12.pdf | Evaluation rubric (PDF download)]]
|-
|-
|  
|  
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==Daily Work==
==Daily Work==
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In addition to the assignments listed above there will be
+
In addition to the assignments listed above you will complete
-
*'''Daily Lab Quizzes''' (5% of final grade)
 
-
**These are intended to refresh your memory about the experiment you are performing. They will not be hard and should take just 5-10 minutes at the beginning of lab. THNK FURTHER ABOUT GOALS FOR THIS ASPECT AND HOW TO REVISE
 
*'''Laboratory Notebooks''' (5% of final grade)
*'''Laboratory Notebooks''' (5% of final grade)
-
**You will record your data on the white pages of a bound notebook. The yellow, duplicate pages will be collected and evaluated by the teaching assistants once per module. DATES SOMEWHERE
+
**You will record your data on the white pages of a bound notebook. The yellow, duplicate pages will be collected and evaluated by the teaching assistants once per module.
-
**Notebooks will be evaluated according to the criteria described [[20.109(S13):Guidelines_for_maintaining_your_lab_notebook |'''here''']].
+
**Notebook due dates and evaluation criteria are described [[20.109(S13):Guidelines_for_maintaining_your_lab_notebook |'''here''']].
 +
*'''Weekly Lab Quizzes''' (5% of final grade)
 +
**About once a week you will take a short (10 min) quiz; quizzes are worth 10 pts each.
 +
**Quizzes have two main purposes: (1) To refresh your memory about the long-term experiment you are performing, and (2) To provide you with an opportunity to show your technical knowledge decoupled from your communication skills.
 +
**Quizzes are based on the ''previous'' lab session(s): both lecture and lab content are fair game. Questions will concern fundamentals rather than details. For example, you might be asked to interpret a piece of data, define a major concept, or perform a short calculation.
 +
**Quiz dates will be linked at the class Google calendar. Briefly, they are: M1D1, M1D3, M1D5, M1D7, M2D3, M2D6, M2D8, M3D2, M3D4, and M3D6.
*'''Homework Assignments''' (7% of final grade)
*'''Homework Assignments''' (7% of final grade)
-
**These will vary considerably in content and associated points/weighting. Most of them will directly prepare you for major assessments (e.g., making a draft figure for a lab report) or lab work (e.g., performing a calculation in advance).  
+
**Like quizzes, homeworks are intended to keep you up to date with the material. Most of them will directly prepare you for major assessments (e.g., making a draft figure for a lab report) or lab work (e.g., performing a calculation in advance). Associated points/weighting will vary widely.
-
**The homeworks can be found in the "for next time" (FNT) section of each lab day as well as in a single list [[20.109(S13):FNT summary page |'''here''']].
+
**The homeworks can be found in the "for next time" (FNT) section of each lab day as well as linked from the class Google calendar. (Coming soon!)
**Assignments should be submitted as hardcopies at the beginning of lab. A select few assignments must also be submitted on [http://stellar.mit.edu/S/course/20/sp13/20.109/ '''Stellar'''] in order to receive feedback from the writing instructors and are marked as such.
**Assignments should be submitted as hardcopies at the beginning of lab. A select few assignments must also be submitted on [http://stellar.mit.edu/S/course/20/sp13/20.109/ '''Stellar'''] in order to receive feedback from the writing instructors and are marked as such.
-
**You can work with your lab partner, friends and teaching assistants on the FNTs but you will hand in individual assignments unless otherwise specified.  
+
**You can work with your lab partner, friends, and teaching assistants on the FNTs but you will hand in individual assignments unless otherwise specified.  
*'''Participation and Reflection''' (3% of final grade)
*'''Participation and Reflection''' (3% of final grade)
**As a student in 20.109, you are expected to be an active participant in a scientific community. Your student colleagues, the teaching faculty, and especially your lab partner are all your collaborators. They rely on you for timely posting of your data, and for your unique and thoughtful contributions during class.
**As a student in 20.109, you are expected to be an active participant in a scientific community. Your student colleagues, the teaching faculty, and especially your lab partner are all your collaborators. They rely on you for timely posting of your data, and for your unique and thoughtful contributions during class.
**One-third of your participation grade will be directly assigned by the teaching faculty, who will consider: whether you asked and/or answered questions during lecture, whether you engaged with opportunities to improve your understanding/communication/etc., and whether you promoted a considerate and collaborative class environment.  
**One-third of your participation grade will be directly assigned by the teaching faculty, who will consider: whether you asked and/or answered questions during lecture, whether you engaged with opportunities to improve your understanding/communication/etc., and whether you promoted a considerate and collaborative class environment.  
-
**To determine the other two-thirds of your participation grade, you will write brief reflective pieces on a few aspects of your 20.109 experience throughout the semester. These assignments will be listed under that day's FNT section, but will be counted separately from other homework. You must complete at least 4 and no more than 6 reflections. The due date schedule and further explanation of both mandatory and optional reflections is linked  [[20.109(S13):Reflection assignments summary page |'''here''']].
+
**To determine the other two-thirds of your participation grade, you will write brief reflective pieces on a few aspects of your 20.109 experience throughout the semester. These assignments will be listed under that day's FNT section, but will be counted separately from other homework. You must complete at least 4 and no more than 7 reflections. The due date schedule and further explanation of both mandatory and optional reflections is linked  [[20.109(S13):Reflection assignments summary page |'''here''']].
==Communication Guidelines and Resources==
==Communication Guidelines and Resources==
-
<font color=FF6699>'''This part of the page is way more important than it looks!'''</font color> Time and time again, students have told us that they wish they had read these guidelines sooner, and that it would have made their early efforts more productive. We understand that it can be difficult to apply abstract ideas to your writing (and presentation) practice right off the bat. So besides reading these guidelines now, revisit them often as you start to draft parts of your reports and presentations.
+
<font color = CC0000>'''This part of the page is way more important than it looks!'''</font color> Time and time again, students have told us that they wish they had read these guidelines sooner, and that it would have made their early efforts more productive. We understand that it can be difficult to apply abstract ideas to your writing (and presentation) practice right off the bat. So besides reading these guidelines now, revisit them often as you start to draft parts of your reports and presentations.
-
This semester you'll also have access to communications-specific assistance. [REVISE FIRST SENTENCE, AWK NOW WITH OTHER CUT] Our Writing Across the Curriculum (WAC) instructors for 20.109, Leslie Ann Roldan and Marilee P Ogren, will be providing written feedback on draft report sections as well your completed draft upon request. They'll also provide formal instruction on the requirements of a lab report and run a workshop on scientific writing using student examples. Finally, they are available for office hours by appointment. For oral presentation assistance, you will hear a lecture from and meet individually with WAC instructor Atissa Banuazizi.
+
This semester you'll also have access to communications-specific assistance from dedicated Writing Across the Curriculum (WAC) faculty. Writing instructors Leslie Ann Roldan and Marilee P Ogren will provide written feedback on draft report sections as well your completed draft upon request (during Module 1). They'll also provide formal instruction on the requirements of a lab report. Finally, they are available for office hours by appointment. For oral presentation assistance, you will hear a lecture from and meet individually with Atissa Banuazizi.
[[20.109(S13):Guidelines for writing up your research | '''Guidelines for writing up your research''']]
[[20.109(S13):Guidelines for writing up your research | '''Guidelines for writing up your research''']]

Current revision

20.109(S13): Laboratory Fundamentals of Biological Engineering

Home        Schedule Spring 2013        Assignments       
DNA Engineering        Protein Engineering        Cell Engineering              


Contents

Overview

You will perform three series of experiments (hereafter “modules”) over the course of the semester. The modules differ in both conceptual and technical content, and in the ways that your learning will be assessed. Links to the experiments and assignments are provided below.

Although your lab work will be done in pairs, most assignments will be submitted individually (as summarized below) and should reflect your personal understanding. Please read the 20.109 statement on collaboration and integrity for more detail about academic honesty in our class. You are encouraged to ask the teaching faculty any questions you have about what constitutes appropriate collaboration.

  • Individual assignments (60% of grade): all lab notebooks, quizzes, and homeworks (unless otherwise noted in directions); Module 1 primer design summary and journal club presentation; Module 2 research article.
  • Team assignments (40% of grade): Module 1 laboratory report (draft and revision), Module 3 data summary, and Module 3 research proposal.

We appreciate that time management can be a difficult skill to develop, and that learning takes place on many time-scales. However, assignments turned in at wildly disparate times create additional logistical burdens for the teaching faculty. Therefore, late work (both daily and culminating assignments) will be penalized 1/3 of a letter grade for each day late and will not be accepted after a week. We strongly recommend that you plan ahead and space out your work when possible.

We will endeavor to provide equal access to subject 20.109 for students with disabilities, in accordance with the Americans with Disabilities Act (ADA) of 1990. Please see the teaching faculty as soon as possible regarding needed accommodations.

Major Assignments

Module Topic Assignment % of Final Grade Links to Description and/or Evaluation
1 DNA Engineering Laboratory report 15 Assignment description
Primer design summary 5 Assignment description
Journal club presentation 10 Sign-up for article
Evaluation rubric (PDF download)
2 Protein Engineering Research article 25 Assignment description
3 Cell Engineering Research idea presentation 20 Assignment description
Evaluation rubric (PDF download)
Data summary 5 Assignment description and evaluation rubric

Daily Work

In addition to the assignments listed above you will complete

  • Laboratory Notebooks (5% of final grade)
    • You will record your data on the white pages of a bound notebook. The yellow, duplicate pages will be collected and evaluated by the teaching assistants once per module.
    • Notebook due dates and evaluation criteria are described here.
  • Weekly Lab Quizzes (5% of final grade)
    • About once a week you will take a short (10 min) quiz; quizzes are worth 10 pts each.
    • Quizzes have two main purposes: (1) To refresh your memory about the long-term experiment you are performing, and (2) To provide you with an opportunity to show your technical knowledge decoupled from your communication skills.
    • Quizzes are based on the previous lab session(s): both lecture and lab content are fair game. Questions will concern fundamentals rather than details. For example, you might be asked to interpret a piece of data, define a major concept, or perform a short calculation.
    • Quiz dates will be linked at the class Google calendar. Briefly, they are: M1D1, M1D3, M1D5, M1D7, M2D3, M2D6, M2D8, M3D2, M3D4, and M3D6.
  • Homework Assignments (7% of final grade)
    • Like quizzes, homeworks are intended to keep you up to date with the material. Most of them will directly prepare you for major assessments (e.g., making a draft figure for a lab report) or lab work (e.g., performing a calculation in advance). Associated points/weighting will vary widely.
    • The homeworks can be found in the "for next time" (FNT) section of each lab day as well as linked from the class Google calendar. (Coming soon!)
    • Assignments should be submitted as hardcopies at the beginning of lab. A select few assignments must also be submitted on Stellar in order to receive feedback from the writing instructors and are marked as such.
    • You can work with your lab partner, friends, and teaching assistants on the FNTs but you will hand in individual assignments unless otherwise specified.
  • Participation and Reflection (3% of final grade)
    • As a student in 20.109, you are expected to be an active participant in a scientific community. Your student colleagues, the teaching faculty, and especially your lab partner are all your collaborators. They rely on you for timely posting of your data, and for your unique and thoughtful contributions during class.
    • One-third of your participation grade will be directly assigned by the teaching faculty, who will consider: whether you asked and/or answered questions during lecture, whether you engaged with opportunities to improve your understanding/communication/etc., and whether you promoted a considerate and collaborative class environment.
    • To determine the other two-thirds of your participation grade, you will write brief reflective pieces on a few aspects of your 20.109 experience throughout the semester. These assignments will be listed under that day's FNT section, but will be counted separately from other homework. You must complete at least 4 and no more than 7 reflections. The due date schedule and further explanation of both mandatory and optional reflections is linked here.

Communication Guidelines and Resources

This part of the page is way more important than it looks! Time and time again, students have told us that they wish they had read these guidelines sooner, and that it would have made their early efforts more productive. We understand that it can be difficult to apply abstract ideas to your writing (and presentation) practice right off the bat. So besides reading these guidelines now, revisit them often as you start to draft parts of your reports and presentations.

This semester you'll also have access to communications-specific assistance from dedicated Writing Across the Curriculum (WAC) faculty. Writing instructors Leslie Ann Roldan and Marilee P Ogren will provide written feedback on draft report sections as well your completed draft upon request (during Module 1). They'll also provide formal instruction on the requirements of a lab report. Finally, they are available for office hours by appointment. For oral presentation assistance, you will hear a lecture from and meet individually with Atissa Banuazizi.

Guidelines for writing up your research

  • General instruction for how to write your lab report and research article.

Guidelines for oral presentations

  • How to give a good oral presentation.

And in case you missed these links above, see also

Guidelines for maintaining your lab notebook

  • How to maintain a good lab notebook.

Statement on collaboration and integrity

  • Academic integrity guidelines specific to 20.109.
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