20.109: Spring 2007 schedule: Difference between revisions

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|'''TA'''
|'''TA'''
|'''LAB'''
|'''LAB'''
|'''note'''
|--
|--
|  
|  
|  
|  
| Tues Feb  
| Tue Feb 6
| [[Natalie Kuldell | NK]]
| [[Natalie Kuldell | NK]]
|  
|  
| [[BE.109:Orientation | Orientation]]
| [[20.109(S07):Lab tour | Orientation]]
|
|--
|--
| colspan="6" |
| colspan="7" |
|--
|--
| 1
| 1
| 1
| 1
| Thurs Feb  
| Thur Feb 8
|  
| [[Drew Endy | DE]]
|  
| [[Sean Clarke | SC]]
| [[BE.109:DNA engineering/DNA engineering by PCR | DNA engineering by PCR]]
| [[20.109(S07):Start-up genome engineering | Start-up genome engineering]]
| [[Media:20109080207.pdf | PDF]] of class discussion slides
|--
|--
| 1
| 1
| 2
| 2
| Tues Feb  
| Tue Feb 13
|  
| [[Drew Endy | DE]]
|  
| [[Sean Clarke | SC]]
| [[BE.109:DNA engineering/Clean and cut DNA | Clean and cut DNA]]
| [[20.109(S07): Agarose gel electrophoresis| Agarose gel electrophoresis]]
| [[Media:20109M1L2.pdf | PDF]] of class notes
|--
|--
| 1
| 1
| 3
| 3
| Thurs
| Thur Feb 15
|  
| [[Drew Endy | DE]]
|  
| [[Sean Clarke | SC]]
| [[BE.109:DNA engineering/Agarose gel electrophoresis | Agarose gel electrophoresis]]
| [[20.109(S07): DNA ligation and bacterial transformation| DNA ligation and bacterial transformation]]
|
|--
|--
|
|
|
|
! colspan="3" | President's Day Feb 20
! colspan="4" | President's Day Feb 19
| '''No lab Feb 21 (Mon schedule) or Feb 22'''
| '''No lab Feb 20 or Feb 21'''
|--
|--
| 1
| 1
| 4
| 4
| Thurs
| Thur Feb 22
|  
| [[Drew Endy | DE]]
|  
| [[Sean Clarke | SC]]
| [[BE.109:DNA engineering/DNA ligation and bacterial transformation | DNA ligation and bacterial transformation]]
| [[20.109(S07): Examine candidate clones| Examine candidate clones]]
| guest lecture from Harlan Breindel
|--
|--
| 1
| 1
| 5
| 5
| Tues Feb
| Tue Feb 27
|  
| [[Drew Endy | DE]]
|  
| [[Sean Clarke | SC]]
| [[BE.109:DNA engineering/Examine candidate clones | Examine candidate clones]]
| [[20.109(S07): Western analysis| Western analysis]]
| [[Media:2010927022007.pdf | PDF]] of class discussion slides
|--
|--
| 1
| 1
| 6
| 6
| Thurs
| Thur Mar 1
|  
| [[Drew Endy | DE]]
|  
| [[Sean Clarke | SC]]
| [[BE.109:DNA engineering/Restriction map and tissue culture | Restriction map+ Article Discussion/Tissue Culture]]
| [[20.109(S07): Probe western| Probe western]]
|--
| first draft of [[20.109(S07): Genome engineering essay| your writing assignment]] due before lab, [[Media:2010901032007.pdf | PDF]] of class slides
| 1
| 7
| Tues
|
|
| [[BE.109:DNA engineering/Lipofection | Lipofection]]
|--
|--
| 1
| colspan="7" |
| 8
| Thurs Mar
|
|
| [[BE.109:DNA engineering/FACS analysis | FACS analysis]]
|--
| colspan="6" |
|--
|--
| 2
| 2
| 1
| 1
| Tues Mar  
| Tue Mar 6
|  
| AJ
|  
| [[Yoon Sung Nam | YSN]]
| [[BE.109:Protein engineering/Tools for protein engineering | Tools for protein engineering]]
| [[20.109(S07): Start-up signal measurement| Start-up signal measurement]]
|
|--
|--
| 2
| 2
| 2
| 2
| Thurs Mar  
| Thur Mar 8
|  
| AJ
|  
| [[Yoon Sung Nam | YSN]]
| [[BE.109:Protein engineering/Assessing beta-galactosidase | Assessing beta-galactosidase]]
| [[20.109(S07): Measuring calcium in vitro| Measuring calcium in vitro]]
|
|--
|--
| 2
| 2
| 3
| 3
| Tues Mar  
| Tue Mar 13
|  
| AJ
|  
| [[Yoon Sung Nam | YSN]]
| [[BE.109:Protein engineering/Purifying beta-galactosidase | Purifying beta-galactosidase]]
| [[20.109(S07): Lipofection| Lipofection]]
|
|--
|--
| 2
| 2
| 4
| 4
| Thurs Mar  
| Thur Mar 15
| AJ
| [[Yoon Sung Nam | YSN]]
| [[20.109(S07): Measuring calcium in vivo| Measuring calcium in vivo]]
|
|--
| 2
| 5
| Tue Mar 20
| AJ
| [[Yoon Sung Nam | YSN]]
| [[20.109(S07): Calcium signaling in vivo| Calcium signaling in vivo]]
|
|--
| 2
| 6
| Thur Mar 22
| AJ
| [[Yoon Sung Nam | YSN]]
| [[20.109(S07): Student presentations, module 2 | Student presentations]]
|
|
|
| [[BE.109:Protein engineering/Possible topics for student presentations | Student presentations]]
|--
|--
|
|
|
|
! colspan="3" | Spring Break Mar 27-31
! colspan="4" | Spring Break Mar 26-30
| '''No lab Mar 27-31'''
| '''No lab all week'''
|--
|--
| colspan="6" |
| colspan="7" |
|--
|--
| [[BE.109:Systems engineering | 3]]
| 3
| 1
| 1
| Tues Apr
| Tue Apr 3
|  
| [[Natalie Kuldell | NK]]
|
| [[Andrea Tentner | AT]]
| [[BE.109:Systems engineering/Tools for systems engineering | Tools for systems engineering]]
| [[20.109(S07): Start-up expression engineering| Start-up expression engineering]]
| [[Media:Macintosh HD-Users-nkuldell-Desktop-lectures-BE109 lectures (S07)-109(S07)lect1 handout.pdf| PDF]] of M3D1 lecture slides 
|--
|--
| [[BE.109:Systems engineering | 3]]
| 3
| 2
| 2
| Thurs Apr  
| Thur Apr 5
|  
| [[Natalie Kuldell | NK]]
|  
| [[Andrea Tentner | AT]]
| [[BE.109:Systems engineering/Basic bacterial photography: black and white | Basic bacterial photography: black and white]]
| [[20.109(S07): Yeast transformation| Yeast transformation]]
| [[Media:Macintosh HD-Users-nkuldell-Desktop-lectures-BE109 lectures (S07)-109(S07)lect2 handout.pdf| PDF]] of M3D2 lecture slides
|--
|--
| [[BE.109:Systems engineering | 3]]
| 3
| 3
| Tues Apr  
| 3
|  
| Tue Apr 10
|  
| [[Natalie Kuldell | NK]]
| [[BE.109:Systems engineering/Advanced bacterial photography: 2 color | Advanced bacterial photography: 2 color]]
| [[Andrea Tentner | AT]]
| [[20.109(S07): Colony PCR| Colony PCR]]
| guest lecture: Susan Ruff and her slides are [[Media:Macintosh HD-Users-nkuldell-Desktop-What is I M R D Anyway.pdf| here]]
|--
|--
| [[BE.109:Systems engineering | 3]]
| 3
| 4
| 4
| Thurs Apr  
| Thur Apr 12
|  
| [[Natalie Kuldell | NK]]
|  
| [[Andrea Tentner | AT]]
| [[BE.109:Systems engineering/Device characterization | Device characterization]]
| [[20.109(S07): Screen for phenotypes, isolate RNA| Screen for phenotypes, isolate RNA]]
| [[Media:Macintosh HD-Users-nkuldell-Desktop-lectures-BE109 lectures (S07)-109(S07)lect3 handout.pdf | PDF]] of M3D4 lecture slides
|--
|--
|
|
|
|
! colspan="3" | Patriot's Day April 17-18
! colspan="4" | Patriot's Day April 16-17
| '''No lab Apr 18 or Apr 19'''
| '''No lab Apr 17 or Apr 18'''
|--
|--
| [[BE.109:Systems engineering | 3]]
| 3
| 5
| 5
| Thurs Apr  
| Thur Apr 19
|  
| [[Natalie Kuldell | NK]]
|  
| [[Andrea Tentner | AT]]
| [[BE.109:Systems engineering/Measuring DNA, RNA, protein | Measuring DNA, RNA, protein]]
| [[20.109(S07): cDNA synthesis and microarray| cDNA synthesis and microarray]]
| [[Media:109(S07)lect4 handout.pdf| PDF]] of M3D5 lecture slides
|--
|--
| [[BE.109:Systems engineering | 3]]
| 3
| 6
| 6
| Tues Apr  
| Tue Apr 24
|  
| [[Natalie Kuldell | NK]]
|  
| [[Andrea Tentner | AT]]
| [[BE.109:Systems engineering/RT-PCR data analysis | RT-PCR data analysis]]
| [[20.109(S07): Microarray data analysis| Microarray data analysis]]
| guest lecture: Rebecca Fry <br> and her slides are [[Media:Macintosh HD-Users-nkuldell-Desktop-dataanalysis20071.pdf| here]]
|--
|--
| colspan="6" |
| colspan="7" |
|--
|--
| 4
| 4
| 1
| 1
| Thurs Apr  
| Thur Apr 26
| AB
| [[Chandni Valiathan | CV]]
| [[20.109(S07):Bio-material engineering/Screening library | Screening library]]
|  
|  
|
| [[BE.109:Bio-material engineering/Screening library | Screening library]]
|--
|--
| 4
| 4
| 2
| 2
| Tues May  
| Tue May 1
|  
| AB
|  
| [[Chandni Valiathan | CV]]
| [[BE.109:Bio-material engineering/Optimizing panning | Optimizing panning]]
| [[20.109(S07): Bio-material engineering/Optimizing panning | Optimizing panning]]
| first draft of [[20.109(S07): Expression engineering report| your writing assignment]] due Monday April 30th by 9AM
|--
|--
| 4
| 4
| 3
| 3
| Thurs May  
| Thur May 3
| AB
| [[Chandni Valiathan | CV]]
| [[20.109(S07): Bio-material engineering/Rescreening gold binders | Rescreening gold binders]]
|  
|  
|
| [[BE.109:Bio-material engineering/Rescreening gold binders | Rescreening gold binders]]
|--
|--
| 4
| 4
| 4
| 4
| Tues May  
| Tue May 8
|  
| AB
|  
| [[Chandni Valiathan | CV]]
| [[BE.109:Bio-material engineering/PCR of gold binding candidates | PCR of gold binding candidates]]
| [[20.109(S07): Bio-material engineering/PCR of gold binding candidates | PCR of gold binding candidates]]
| Mod 3 lab reports returned for revision
|--
|--
| 4
| 4
| 5
| 5
| Thurs May  
| Thur May 10
| AB
| [[Chandni Valiathan | CV]]
| [[20.109 (S07): Research proposal, module 4| Student presentations]]
|  
|  
|
| [[BE.109:Presenting your work | Student presentations]]
|--
|--
| 4
| 4
| 6
| 6
| Tues May  
| Tue May 15
|  
| AB
|  
| [[Chandni Valiathan | CV]]
| [[BE.109:Bio-material engineering/Sequence analysis | Analyze sequence data]]
| [[20.109(S07): Bio-material engineering/Sequence analysis | Analyze sequence data]]
| Revised Mod 3 writing assignment due before lab<br> no lecture today
|--
|--
|
|
|
|
| Thurs May 18
| Thur May 17
|
|
|
|
| Lecture only, no lab
| Lecture only, no lab
|
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|}
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Latest revision as of 14:00, 23 April 2007


20.109: Laboratory Fundamentals of Biological Engineering

Home        People        Schedule Spring 2007        Lab Basics        OWW Basics       
Genome Engineering        Biophysical Signal Measurement        Expression Engineering        Biomaterial Engineering       

MODULE DAY DATE LECTURER TA LAB note
Tue Feb 6 NK Orientation
1 1 Thur Feb 8 DE SC Start-up genome engineering PDF of class discussion slides
1 2 Tue Feb 13 DE SC Agarose gel electrophoresis PDF of class notes
1 3 Thur Feb 15 DE SC DNA ligation and bacterial transformation
President's Day Feb 19 No lab Feb 20 or Feb 21
1 4 Thur Feb 22 DE SC Examine candidate clones guest lecture from Harlan Breindel
1 5 Tue Feb 27 DE SC Western analysis PDF of class discussion slides
1 6 Thur Mar 1 DE SC Probe western first draft of your writing assignment due before lab, PDF of class slides
2 1 Tue Mar 6 AJ YSN Start-up signal measurement
2 2 Thur Mar 8 AJ YSN Measuring calcium in vitro
2 3 Tue Mar 13 AJ YSN Lipofection
2 4 Thur Mar 15 AJ YSN Measuring calcium in vivo
2 5 Tue Mar 20 AJ YSN Calcium signaling in vivo
2 6 Thur Mar 22 AJ YSN Student presentations
Spring Break Mar 26-30 No lab all week
3 1 Tue Apr 3 NK AT Start-up expression engineering PDF of M3D1 lecture slides
3 2 Thur Apr 5 NK AT Yeast transformation PDF of M3D2 lecture slides
3 3 Tue Apr 10 NK AT Colony PCR guest lecture: Susan Ruff and her slides are here
3 4 Thur Apr 12 NK AT Screen for phenotypes, isolate RNA PDF of M3D4 lecture slides
Patriot's Day April 16-17 No lab Apr 17 or Apr 18
3 5 Thur Apr 19 NK AT cDNA synthesis and microarray PDF of M3D5 lecture slides
3 6 Tue Apr 24 NK AT Microarray data analysis guest lecture: Rebecca Fry
and her slides are here
4 1 Thur Apr 26 AB CV Screening library
4 2 Tue May 1 AB CV Optimizing panning first draft of your writing assignment due Monday April 30th by 9AM
4 3 Thur May 3 AB CV Rescreening gold binders
4 4 Tue May 8 AB CV PCR of gold binding candidates Mod 3 lab reports returned for revision
4 5 Thur May 10 AB CV Student presentations
4 6 Tue May 15 AB CV Analyze sequence data Revised Mod 3 writing assignment due before lab
no lecture today
Thur May 17 Lecture only, no lab
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