20.181:Assignments: Difference between revisions
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#*[[Media:Tree3.pdf | pdf of example tree ]] | #*[[Media:Tree3.pdf | pdf of example tree ]] | ||
#* [[20:181:Materials:HW3_helper | smaller test tree (with answers)]] | #* [[20:181:Materials:HW3_helper | smaller test tree (with answers)]] | ||
#*[[Media:Hw3_sol.py | a solution]] | |||
#[[Media:20.181.hw4.pdf | Assignment #4 PDF]] due before Sept. 28 | #[[Media:20.181.hw4.pdf | Assignment #4 PDF]] due before Sept. 28 | ||
#*[[Media:hw4.py | hw4.py codebase for hw4]] | #*[[Media:hw4.py | hw4.py codebase for hw4]] | ||
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#*[[Media:seqs.aln | Example sequence alignment]] | #*[[Media:seqs.aln | Example sequence alignment]] | ||
#* [http://en.wikibooks.org/wiki/Python_Programming/Sets Using sets in Python] | #* [http://en.wikibooks.org/wiki/Python_Programming/Sets Using sets in Python] | ||
#*[[Media:Hw4_sol.py | a solution]] | |||
#[[Media:20.181.hw5.pdf | Assignment #5 PDF]] due before Oct. 10 | #[[Media:20.181.hw5.pdf | Assignment #5 PDF]] due before Oct. 10 | ||
#*[[Media:hw5.py | hw5.py codebase for hw5]] '''updated!''' -[[User:SoniaT|Sonia]] 19:58, 5 October 2006 (EDT) | #*[[Media:hw5.py | hw5.py codebase for hw5]] '''updated!''' -[[User:SoniaT|Sonia]] 19:58, 5 October 2006 (EDT) | ||
Revision as of 20:49, 9 October 2006
Phylogenetic Inference
- Assignment #1 PDF due before Sept. 14 (due on Wednesday before midnight)
- Assignment #2 PDF due before Sept. 19
- hw2.py: codebase for assignment #2 (run with "python hw2.py")
- Example tree
- a solution
- Assignment #3 PDF due before Sept. 21,
- Hw3.py: codebase for assignment #3 run with "python hw3.py",
- Example tree in Newick form
- pdf of example tree
- smaller test tree (with answers)
- a solution
- Assignment #4 PDF due before Sept. 28
- Assignment #5 PDF due before Oct. 10
- hw5.py codebase for hw5 updated! -Sonia 19:58, 5 October 2006 (EDT)
- Example tree
- Example sequence alignment
- jukes-cantor placeholding code
Molecular Modeling
- Assignment #6 PDF due before Oct. 17
