20.181:Assignments

From OpenWetWare

(Difference between revisions)
Jump to: navigation, search
(Phylogenetic Inference)
Current revision (19:45, 11 December 2006) (view source)
(Discrete Reaction Events)
 
(39 intermediate revisions not shown.)
Line 3: Line 3:
#[[Media:20181HW1.pdf | Assignment #1 PDF]] due before Sept. 14 (due on Wednesday before midnight)
#[[Media:20181HW1.pdf | Assignment #1 PDF]] due before Sept. 14 (due on Wednesday before midnight)
#*[[Media:Hw1_sol.py | solution to fibonacci portion]]
#*[[Media:Hw1_sol.py | solution to fibonacci portion]]
 +
#*[[Media:Hw1_sol_UPGMA.pdf | solution to UPGMA portion]]
#[[Media:20.181.hw2.pdf | Assignment #2 PDF]] due before Sept. 19
#[[Media:20.181.hw2.pdf | Assignment #2 PDF]] due before Sept. 19
#*[[Media:hw2.txt | hw2.py: codebase for assignment #2]] (run with "python hw2.py")
#*[[Media:hw2.txt | hw2.py: codebase for assignment #2]] (run with "python hw2.py")
Line 24: Line 25:
#*[[Media:seqs5.aln | Example sequence alignment]]
#*[[Media:seqs5.aln | Example sequence alignment]]
#*[[20.181:sadEvoModel| jukes-cantor placeholding code]]
#*[[20.181:sadEvoModel| jukes-cantor placeholding code]]
 +
#*[[Media:Hw5_sol.py | a solution]]
 +
#*[[Media:Hw_derivation.pdf | a derivation]]
==Molecular Modeling==
==Molecular Modeling==
#[[Media:20.181.hw6.pdf | Assignment #6 PDF]] due before Oct. 17
#[[Media:20.181.hw6.pdf | Assignment #6 PDF]] due before Oct. 17
#*[[Media:Data6.txt | Example data]]
#*[[Media:Data6.txt | Example data]]
 +
#*[[Media:HW6syntaxHelper.pdf | HW6 Syntax Helper]]
 +
#[[Media:20.181.hw7.pdf | Assignment #7 PDF]] due before Oct. 27
 +
#*[[Media:Data7.txt | Example data]]
 +
#*[[Media:Vector.txt | Python module for vector math]]
 +
#*[[Media:Hw7_solutions.txt | the answers!]]
 +
#[[Media:20.181.hw8.pdf | Assignment #8 PDF]] due before Nov. 7
 +
#*[[Media:hw8_Updated.zip | Code and data for hw8]]
 +
#[[Media:20.181.hw9.pdf | Assignment #9 PDF]] due before Nov. 15
 +
#*[[Media:Hw9_updated.zip | Code and data for hw9]]
 +
#*[[Media:Athena_help.txt|help with getting the codebase onto your athena account]]
-
==Metabolic Networks==
+
==Discrete Reaction Events==
 +
#[[Media:HW10.pdf | Assignment #10 PDF]] due by midnight on December 4th
 +
#*[[Media:Hw10.zip]]
 +
#*[[Media:Athena_help2.txt| Help with getting the codebase onto your athena account]]
 +
#*[[Hw10_solutions]]
 +
 
 +
#[[Media:Hw11.pdf | Assignment #11 PDF]]  '''*OPTIONAL*''', turn in by Monday 5pm if you want feedback.
 +
#*[[Media:Hw11.zip]] '''updated''' [[User:SoniaT|Sonia]] 12:22, 8 December 2006 (EST)
 +
#*[[Hw11 hints]]
 +
#*[http://openwetware.org/wiki/20.181:hw11_sols hw 11 sols]

Current revision

20.181 Biological Engineering Computation

Image:Zif268GCN4.png

Home        Syllabus        Assignments        Exams        Expectations        Materials       

Phylogenetic Inference

  1. Assignment #1 PDF due before Sept. 14 (due on Wednesday before midnight)
  2. Assignment #2 PDF due before Sept. 19
  3. Assignment #3 PDF due before Sept. 21,
  4. Assignment #4 PDF due before Sept. 28
  5. Assignment #5 PDF due before Oct. 10

Molecular Modeling

  1. Assignment #6 PDF due before Oct. 17
  2. Assignment #7 PDF due before Oct. 27
  3. Assignment #8 PDF due before Nov. 7
  4. Assignment #9 PDF due before Nov. 15

Discrete Reaction Events

  1. Assignment #10 PDF due by midnight on December 4th
  1. Assignment #11 PDF *OPTIONAL*, turn in by Monday 5pm if you want feedback.
Personal tools