20.181:Assignments
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#*[[Media:Data7.txt | Example data]] | #*[[Media:Data7.txt | Example data]] | ||
#*[[Media:Vector.txt | Python module for vector math]] | #*[[Media:Vector.txt | Python module for vector math]] | ||
| - | #*[[Media: | + | #*[[Media:Hw7_solutions.txt | the answers!]] |
#[[Media:20.181.hw8.pdf | Assignment #8 PDF]] due before Nov. 7 | #[[Media:20.181.hw8.pdf | Assignment #8 PDF]] due before Nov. 7 | ||
#*[[Media:hw8_Updated.zip | Code and data for hw8]] | #*[[Media:hw8_Updated.zip | Code and data for hw8]] | ||
| + | #[[Media:20.181.hw9.pdf | Assignment #9 PDF]] due before Nov. 15 | ||
| + | #*[[Media:Hw9_updated.zip | Code and data for hw9]] | ||
| + | #*[[Media:Athena_help.txt|help with getting the codebase onto your athena account]] | ||
| - | == | + | ==Discrete Reaction Events== |
| + | #[[Media:HW10.pdf | Assignment #10 PDF]] due by midnight on December 4th | ||
| + | #*[[Media:Hw10.zip]] | ||
| + | #*[[Media:Athena_help2.txt| Help with getting the codebase onto your athena account]] | ||
| + | #*[[Hw10_solutions]] | ||
| + | |||
| + | #[[Media:Hw11.pdf | Assignment #11 PDF]] '''*OPTIONAL*''', turn in by Monday 5pm if you want feedback. | ||
| + | #*[[Media:Hw11.zip]] '''updated''' [[User:SoniaT|Sonia]] 12:22, 8 December 2006 (EST) | ||
| + | #*[[Hw11 hints]] | ||
| + | #*[http://openwetware.org/wiki/20.181:hw11_sols hw 11 sols] | ||
Current revision
Phylogenetic Inference
- Assignment #1 PDF due before Sept. 14 (due on Wednesday before midnight)
- Assignment #2 PDF due before Sept. 19
- hw2.py: codebase for assignment #2 (run with "python hw2.py")
- Example tree
- a solution
- Assignment #3 PDF due before Sept. 21,
- Hw3.py: codebase for assignment #3 run with "python hw3.py",
- Example tree in Newick form
- pdf of example tree
- smaller test tree (with answers)
- a solution
- Assignment #4 PDF due before Sept. 28
- Assignment #5 PDF due before Oct. 10
- hw5.py codebase for hw5 updated! -Sonia 19:58, 5 October 2006 (EDT)
- Example tree
- Example sequence alignment
- jukes-cantor placeholding code
- a solution
- a derivation
Molecular Modeling
- Assignment #6 PDF due before Oct. 17
- Assignment #7 PDF due before Oct. 27
- Assignment #8 PDF due before Nov. 7
- Assignment #9 PDF due before Nov. 15
Discrete Reaction Events
- Assignment #10 PDF due by midnight on December 4th
- Assignment #11 PDF *OPTIONAL*, turn in by Monday 5pm if you want feedback.
- Media:Hw11.zip updated Sonia 12:22, 8 December 2006 (EST)
- Hw11 hints
- hw 11 sols
