20.309: Difference between revisions

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{| width="100%"  
{| width="100%"  
|-bgcolor="#FF8888" align="center"
|-bgcolor="#FF8888" align="center"
|'''Lab Report #2 Due 10/26 (see announcements below)'''
|'''Homework #3 is Due 11/6'''
|}
|}


==Announcements==
==Announcements==
'''October 29, 2007'''
*[[20.309:Homeworks/Homework 3|Homework # 3]] (due 11/6) has been posted.
'''October 26, 2007'''
'''October 26, 2007'''
*Slides from Professor So's lectures are available in the course locker
*Slides from Professor So's lectures are available in the course locker
Line 21: Line 24:


==This week==
==This week==
{{Template:20.309Week
|StartDate=10/29
|EndDate=11/2
|Lecture1=
*Geometric optics
*Ray tracing
*optical microscopy
|Lecture2=
*Student presentation
|Recitation=
*Student presentations
*Fluorescence microscope design review presentations
|Readings=
From Gonzalez & Woods:
*[http://www.media.mit.edu/nanoscale/courses/BE309/private/readings/GonzalezWoodsCh4.pdf Chapter 4]: histograms, contrast, spatial filtering
*[http://www.media.mit.edu/nanoscale/courses/BE309/private/readings/GonzalezWoodsCh8.pdf Chapter 8]: morphological operations
*[http://www.media.mit.edu/nanoscale/courses/BE309/private/readings/GonzalezWoodsCh7.pdf Chapter 7]: segmentation
*[http://www.media.mit.edu/nanoscale/courses/BE309/private/readings/GonzalezWoodsCh9.pdf Chapter 9]: recognition & interpretation
|Homework=
[[20.309:Homeworks/Homework 3|Homework #3]]
}}
==Next week==
{{Template:20.309Week
|StartDate=11/5
|EndDate=11/9
|Lecture1=
*Fluorescence spectroscopy & microscopy
|Lecture2=
*Advanced fluorescence microscopy
|Recitation=
*Student presentations (Session #5)
|Readings=
From Gonzalez & Woods:
*[[Media:20.309_ImProcLect2_supp.pdf|Supplementary slides to image processing lectures]]
*[http://www.mathworks.com/company/newsletters/digest/sept01/matrix.html Matlab Matrix Indexing Tutorial]
*[http://www.microscopyu.com/index.html Nikon "MicroscopyU"]
*[http://micro.magnet.fsu.edu/primer/index.html Molecular Expressions Optical Microscopy Primer]
|Homework=
[[20.309:Homeworks/Homework 3|Homework #3]] due Tuesday
|Lab=
*Building Fluorescence Microscopes
}}
==Week 7==
{{Template:20.309Week
{{Template:20.309Week
|StartDate=10/22
|StartDate=10/22
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}}
}}


==Week 6==
{{Template:20.309Week
{{Template:20.309Week
|StartDate=10/15
|StartDate=10/15

Revision as of 13:58, 29 October 2007

20.309: Biological Instrumentation and Measurement

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Homework #3 is Due 11/6

Announcements

October 29, 2007

October 26, 2007

  • Slides from Professor So's lectures are available in the course locker

October 22, 2007

October 15, 2007

  • The imaging and force spectroscopy portions of the AFM module are now optional (for extra credit).
  • Please do the thermal noise measurements this week to ensure that you have enough time for data analysis.

This week

10/29-11/2
Lecture & Recitation
Tuesday
  • Geometric optics
  • Ray tracing
  • optical microscopy
Thursday
  • Student presentation
Friday
  • Student presentations
  • Fluorescence microscope design review presentations
Optional reading
  • No optional readings this week
Homework

Homework #3

Lab
  • No lab this week

Next week

11/5-11/9
Lecture & Recitation
Tuesday
  • Fluorescence spectroscopy & microscopy
Thursday
  • Advanced fluorescence microscopy
Friday
  • Student presentations (Session #5)
Optional reading
  • No optional readings this week
Homework

Homework #3 due Tuesday

Lab
  • Building Fluorescence Microscopes

Week 7

10/22-10/27
Lecture & Recitation
Tuesday
Thursday
  • Optical Instruments I: Physics, Noises, Detectors
Friday
  • Optical Instruments II: Detectors, Lamps, Lasers
Optional reading
  • No optional readings this week
Homework
  • None assigned
Lab

Week 6

10/15-10/19
Lecture & Recitation
Tuesday
  • Atomic force microscopy
Thursday
  • Image processing
Friday
  • MANDATORY: Laser safety training
  • Image processing in MatLAB
Optional reading
  • No optional readings this week
Homework

Homework Set #2 (due 10/18 at lecture)

Lab
  • AFM alignment and calibration
  • AFM thermal noise measurement

Week 5

10/8-10/12
Lecture & Recitation
Tuesday
  • No lecture (holiday)
Thursday
  • Equipartition theorem and thermal fluctuations
Friday
Optional reading
  • No optional readings this week
Homework

Homework Set #2 (due 10/18 at lecture)

Lab
  • DNA Melting lab report due
  • AFM alignment and calibration
  • AFM imaging I

Week 4

10/1-10/5
Lecture & Recitation
Tuesday
  • PSD and signal-to-noise
  • Convolution
Thursday
  • Convolution Theorem
  • Application to lock-in detection
Friday
  • Introduction to AFM lab module
Optional reading
  • No optional readings this week
Homework
Lab

Week 3(9/25-9/28)

Lecture & recitation

Tuesday

  • Fourier analysis (cont'd)

Thu, Sep. 27

  • Signals, noise, Power Spectral Density

Friday

Readings

Homework

Homework Set #1 (due 9/25)


Lab

Week 2 (9/17-9/21)

Lecture & recitation

Tuesday

  • Feedback
  • Black's formula
  • op-amps: "golden rules" and circuit examples

Thursday

  • Fourier series & integrals
  • Fourier transform (continuous & discrete)

Friday

  • Review of ideal elements and circuit modeling
  • Modeling a battery with the ideal elements
  • Real vs. ideal op-amps
  • Ugly op-amp example

Readings

Homework

Homework Set #1 (due 9/25)

Lab

Lab manual for DNA Melting (weeks 2-4, due 10/12)

Week 1 (9/10-9/14)

Readings

RC Circuits

Primary: Art of Electronics (Hayes and Horowitz)

Supplemental: MIT 6.002 notes

This brief introduction to diodes will be helpful for working on the labs this week.

Homework

Homework Set #1 (due 9/21)

Lab

Lab manual for Introduction to Electronics


Week 0 (9/6-9/7)

Readings

DC Circuits

Primary: Art of Electronics (Hayes and Horowitz)

Supplemental: MIT 6.002 notes


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