20.309:Schedule: Difference between revisions
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<p><b>[[Media:OpticsLect1.pdf| Thu, Nov. 1]]</b><br> | <p><b>[[Media:OpticsLect1.pdf| Thu, Nov. 1]]</b><br> | ||
Optical instrumentation II: detectors, noise; Statistics I</p> | Optical instrumentation II: detectors, noise; Statistics I</p> | ||
<p><b>Fri, Nov. 2</b><br> | <p><b>Fri, Nov. 2 (RECITATION)</b><br> | ||
Intro to [[Media:20.309f06mod3.pdf|Microscopy lab module]] and <b><i>design review presentations</i></b></p> | Intro to [[Media:20.309f06mod3.pdf|Microscopy lab module]] and <b><i>design review presentations</i></b></p> | ||
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<td width="34%" valign="top"> | <td width="34%" valign="top"> | ||
<p><b>Mon, Nov. 5 - Fri, Nov. 9</b><br> | <p><b>Mon, Nov. 5 - Fri, Nov. 9</b><br> | ||
<u>Lab manual for weeks 9-11: [[Media:20.309f06mod3.pdf|Fluorescence microscope construction I]]: white light imaging | <u>Lab manual for weeks 9-11: [[Media:20.309f06mod3.pdf|Fluorescence microscope construction I]]:</u> | ||
lenses, white light imaging, resolution/alignment, begin fluorescence</p> | |||
</td> | </td> | ||
<td width="30%" valign="top"> | <td width="30%" valign="top"> | ||
<p><b>Readings</b></p> | |||
<p> Nice online microscopy references: <br> | |||
[http://www.microscopyu.com/index.html "MicroscopyU" from Nikon] | |||
and [http://micro.magnet.fsu.edu/primer/index.html Molecular Expressions Optical Microscopy Primer]</p> | |||
<p><font color=#aa0000>[[Media:HW3.pdf|HOMEWORK SET 3]] (Image Processing) DUE.</font></p> | <p><font color=#aa0000>[[Media:HW3.pdf|HOMEWORK SET 3]] (Image Processing) DUE.</font></p> | ||
</td> | </td> | ||
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<td width="5%" valign="top"><b> 10</b></td> | <td width="5%" valign="top"><b> 10</b></td> | ||
<td width="31%" valign="top"> | <td width="31%" valign="top"> | ||
<p><b>[[Media: | <p><b>[[Media:20.309_MicroRheolLect2.pdf|Tue, Nov. 13]]</b><br> | ||
Microrheology & particle tracking</p> | |||
<p><b>[[Media: | <p><b>[[Media:309TrappingLect.pdf|Thu, Nov. 15]]</b><br> | ||
Optical trapping (Prof. Matt Lang guest lecture)</p> | |||
<p><b>Fri, Nov. 16</b><br> | |||
[[20.309:Presentations|Student presentations]] (Session #6)</p> | |||
</td> | </td> | ||
<td width="34%" valign="top"> | <td width="34%" valign="top"> | ||
<p><i><b>NO LAB MONDAY NOV. 12<br> (Veteran's Day)</b></i></p> | <p><i><b>NO LAB MONDAY NOV. 12<br> (Veteran's Day)</b></i></p> | ||
<p><b>Tue, Nov. 13 - Fri, Nov. 16</b><br> | <p><b>Tue, Nov. 13 - Fri, Nov. 16</b><br> | ||
<u>Lab manual for weeks 9-11: [[Media:20.309f06mod3.pdf|Fluorescence microscope construction II]]: | <u>Lab manual for weeks 9-11: [[Media:20.309f06mod3.pdf|Fluorescence microscope construction II]]:</u> | ||
finish construction, live-cell imaging; particle tracking & microrheology </p> | |||
</td> | </td> | ||
<td width="30%" valign="top"> | <td width="30%" valign="top"> | ||
<p> | <p>MATLAB scripts for calculating [[Media:getMSD_BE309.m|MSD]] and [[Media:getGstar_Mason_BE309.m|G*]]</p> | ||
</td> | </td> | ||
</tr> | </tr> | ||
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</td> | </td> | ||
<td width="30%" valign="top"> | <td width="30%" valign="top"> | ||
<p>Three papers about peacock feathers:<br> | <p>Three papers about peacock feathers:<br> | ||
– [http://www.media.mit.edu/nanoscale/courses/BE309/private/papers/Zi_PeacockColor_PNAS2003.pdf Zi, <i>PNAS</i> (2003)]<br> | – [http://www.media.mit.edu/nanoscale/courses/BE309/private/papers/Zi_PeacockColor_PNAS2003.pdf Zi, <i>PNAS</i> (2003)]<br> | ||
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<td width="5%" valign="top"><b> 12</b></td> | <td width="5%" valign="top"><b> 12</b></td> | ||
<td width="31%" valign="top"> | <td width="31%" valign="top"> | ||
<p><b>[[Media: | <p><b>[[Media:OpticsLect4.pdf|Tue, Nov. 27]]</b><br> | ||
Interference and diffraction, phase-contrast microscopy</p> | |||
<p><b>[[Media:20.309_OpticsLect6.pdf| | <p><b>[[Media:20.309_OpticsLect6.pdf|Thu, Nov. 29]]<br> | ||
</b> | </b>Resolution in microscopy, Fourier optics + <b><i>demo</i></b></p> | ||
</td> | </td> | ||
<td width="34%" valign="top"> | <td width="34%" valign="top"> |
Revision as of 07:15, 30 August 2007
WEEK | LECTURES & RECITATIONS | LAB | READINGS & ASSIGNMENTS |
Electronics
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0 |
Thu, Sep. 6 Fri, Sep. 7 (LECTURE) |
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1 |
Tue, Sep. 11 Thu, Sep. 13 Fri, Sep. 14 (RECITATION) |
Mon, Sep. 10 - Fri, Sep. 14 |
Readings Impedance, frequency response, filters. This brief introduction to diodes will be helpful for working on the labs this week. |
2 |
Tue, Sep. 18 Thu, Sep. 20 Fourier series & integrals; Fourier transform (continuous & discrete) Fri, Sep. 21 (RECITATION) MATLAB tutorial and Lab Report Guidelines |
Mon, Sep. 18 - Fri, Sep. 22 |
Readings Operational amplifiers. Matlab Tutorial file 1 (the basics) Matlab Tutorial file 2 (curve fitting, etc.)
HOMEWORK SET 1, DUE. |
3 |
Tue, Sep. 25 Thu, Sep. 27 Fri, Sep. 28 |
NO LAB MONDAY SEP. 24 Tue, Sep. 25 - Fri, Sep. 28 |
Readings Tutorial 1: Overview of Fourier Transforms |
Mechanics
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4 |
Tue, Oct. 2 Thu, Oct. 4 Fri, Oct. 5 (RECITATION) |
Mon, Oct. 1 - Fri, Oct. 5 |
Readings One-page handout, with a few convolution clarification examples. A helpful link that discusses spectral leakage when doing spectral analysis. |
5 |
NO LECTURE TUESDAY, OCT. 9 Thu, Oct. 11 Fri, Oct. 12 |
NO LAB MON-TUE Wed, Oct. 10 - Fri, Oct. 12 Lab manual for weeks 5 - 7: The Atomic Force Microscope |
LAB REPORT #1 (Measuring DNA Melting Curves) DUE |
6 |
Tue, Oct. 16 Thu, Oct. 18 Fri, Oct. 19 (RECITATION) |
Monday, Oct. 15 - Friday Oct. 19 Lab manual for weeks 5 - 7: The Atomic Force Microscope |
HOMEWORK SET 2, DUE. |
Optics
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7 |
Tue, Oct. 23 Thu, Oct. 25 Fri, Oct. 26 |
Mon, Oct. 22 - Fri, Oct. 26 Lab manual for weeks 5 - 7: The Atomic Force Microscope |
Readings Great Matlab Matrix Indexing Tutorial Nice online microscopy references: |
8 |
Tue, Oct. 30 Thu, Nov. 1 Fri, Nov. 2 (RECITATION) |
Mon, Oct. 29 - Fri, Nov. 2 Handout on Image Processing |
Readings LAB REPORT #2 (The Atomic Force Microscope) DUE. |
9 |
Tue, Nov. 6 Thu, Nov. 8 Fri, Nov. 9 |
Mon, Nov. 5 - Fri, Nov. 9 |
Readings Nice online microscopy references: HOMEWORK SET 3 (Image Processing) DUE. |
10 |
Tue, Nov. 13 Thu, Nov. 15 Fri, Nov. 16 |
NO LAB MONDAY NOV. 12 Tue, Nov. 13 - Fri, Nov. 16 |
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11 |
Tuesday, Nov. 21 NO LECTURE THURSDAY, NOV. 23 |
Monday, Nov. 20 - Wednesday, Nov. 24 Papers referenced in the lab manual: NO LAB THU-FRI |
Three papers about peacock feathers: |
12 |
Tue, Nov. 27 Thu, Nov. 29 |
Monday, Nov. 27 - Wednesday, Nov. 29 Wednesday, Nov. 29 - Friday, Dec. 1 Preprint of AJP paper by Appleyard et al. on the 20.309 traps. |
Thursday, Nov. 30 @ 8:00pm – Room 56-614 |
13 |
Tuesday, Dec. 5 Thursday, Dec. 7 |
Monday, Dec. 4 - Wednesday Dec. 6 Thursday, Dec. 7 - Friday, Dec. 8 |
LAB REPORT #3 (Fluorescence Microscope) due Monday, Dec. 4, by 12:00 noon. |
14 | Tuesday, Dec. 12 Thursday, Dec. 14 |
Monday, Dec. 11 - Wednesday, Dec. 13 |
LAB REPORT #4 (Optical Trapping) due Monday, Dec. 11, by 12:00 noon. Tuesday, Dec. 12 (in class) |