20.309:Schedule
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Intro to microscopy: geometric optics, lenses, ray tracing</p>  Intro to microscopy: geometric optics, lenses, ray tracing</p>  
<p><b>Fri, Oct. 26</b><br>  <p><b>Fri, Oct. 26</b><br>  
  Image processing tutorial & [[20.309:PresentationsStudent presentations]] (Session #  +  Image processing tutorial & [[20.309:PresentationsStudent presentations]] (Session #4)</p> 
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  <p><b>Readings</b  +  <p><b>Readings</b> 
  +  <p> Nice online microscopy references: <br>  
  +  [http://www.microscopyu.com/index.html "MicroscopyU" from Nikon] and [http://micro.magnet.fsu.edu/primer/index.html Molecular Expressions Optical Microscopy Primer]</p>  
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+  <p><b>Readings</b><br>  
+  [http://www.mathworks.com/company/newsletters/digest/sept01/matrix.html Great Matlab Matrix Indexing Tutorial]</p>  
+  <p>Image Processing Readings (from Gonzalez & Woods):<br>  
+  [http://www.media.mit.edu/nanoscale/courses/BE309/private/readings/GonzalezWoodsCh4.pdf Chapter 4]: histograms, contrast, spatial filtering. <br>  
+  [http://www.media.mit.edu/nanoscale/courses/BE309/private/readings/GonzalezWoodsCh8.pdf Chapter 8]: morphological operations <br>  
+  [http://www.media.mit.edu/nanoscale/courses/BE309/private/readings/GonzalezWoodsCh7.pdf Chapter 7]: segmentation <br>  
+  [http://www.media.mit.edu/nanoscale/courses/BE309/private/readings/GonzalezWoodsCh9.pdf Chapter 9]: recognition & interpretation </p>  
<p><font color=#aa0000>LAB REPORT #2 ([[Media:20309f06mod2.pdfThe Atomic Force Microscope]]) DUE.</font>  <p><font color=#aa0000>LAB REPORT #2 ([[Media:20309f06mod2.pdfThe Atomic Force Microscope]]) DUE.</font>  
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  +  <p><font color=#aa0000>[[Media:HW3.pdfHOMEWORK SET 3]] (Image Processing) DUE.</font></p>  
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Revision as of 16:07, 28 August 2007
WEEK  LECTURES & RECITATIONS  LAB  READINGS & ASSIGNMENTS 
Electronics


0 
Thu, Sep. 6 Fri, Sep. 7 (LECTURE) 

1 
Tue, Sep. 11 Thu, Sep. 13 Fri, Sep. 14 (RECITATION) 
Mon, Sep. 10  Fri, Sep. 14 
Readings Impedance, frequency response, filters. This brief introduction to diodes will be helpful for working on the labs this week. 
2 
Tue, Sep. 18 Thu, Sep. 20 Fourier series & integrals; Fourier transform (continuous & discrete) Fri, Sep. 21 (RECITATION) MATLAB tutorial and Lab Report Guidelines 
Mon, Sep. 18  Fri, Sep. 22 
Readings Operational amplifiers. Matlab Tutorial file 1 (the basics) Matlab Tutorial file 2 (curve fitting, etc.)
HOMEWORK SET 1, DUE. 
3 
Tue, Sep. 25 Thu, Sep. 27 Fri, Sep. 28 
NO LAB MONDAY SEP. 24 Tue, Sep. 25  Fri, Sep. 28 
Readings Tutorial 1: Overview of Fourier Transforms 
Mechanics


4 
Tue, Oct. 2 Thu, Oct. 4 Fri, Oct. 5 (RECITATION) 
Mon, Oct. 1  Fri, Oct. 5 
Readings A helpful link that discusses spectral leakage when doing spectral analysis. 
5 
NO LECTURE TUESDAY, OCT. 9 Thu, Oct. 11 Fri, Oct. 12 
NO LAB MONTUE Wed, Oct. 10  Fri, Oct. 12 Lab manual for weeks 5  7: The Atomic Force Microscope 
LAB REPORT #1 (Measuring DNA Melting Curves) DUE 
6 
Tue, Oct. 16 Thu, Oct. 18 Fri, Oct. 19 (RECITATION) 
Monday, Oct. 15  Friday Oct. 19 Lab manual for weeks 5  7: The Atomic Force Microscope 
HOMEWORK SET 2, DUE. 
Optics


7 
Tue, Oct. 23 Thu, Oct. 25 Fri, Oct. 26 
Mon, Oct. 22  Fri, Oct. 26 Lab manual for weeks 5  7: The Atomic Force Microscope 
Readings
<p> Nice online microscopy references: 
8 
Tuesday, Oct. 31 Thursday, Nov. 2 
Mon, Oct. 29  Fri, Nov. Handout on Image Processing 
Readings Image Processing Readings (from Gonzalez & Woods): LAB REPORT #2 (The Atomic Force Microscope) DUE. 
9 
Tuesday, Nov. 7 Thursday, Nov. 9 
Monday, Nov. 6  Friday, Nov. 9 NO LAB FRIDAY NOV. 10 
HOMEWORK SET 3 (Image Processing) DUE. 
10 
Tuesday, Nov. 14 Thursday, Nov. 16 
Monday, Nov. 13  Friday, Nov. 17 
Thursday, Nov. 16 @ 8:00pm – Room 56614 
11 
Tuesday, Nov. 21 NO LECTURE THURSDAY, NOV. 23 
Monday, Nov. 20  Wednesday, Nov. 24 Papers referenced in the lab manual: NO LAB THUFRI 
MATLAB scripts for calculating MSD and G* Three papers about peacock feathers: 
12 
Tuesday, Nov. 28 Thursday, Nov. 30 
Monday, Nov. 27  Wednesday, Nov. 29 Wednesday, Nov. 29  Friday, Dec. 1 Preprint of AJP paper by Appleyard et al. on the 20.309 traps. 
Thursday, Nov. 30 @ 8:00pm – Room 56614 
13 
Tuesday, Dec. 5 Thursday, Dec. 7 
Monday, Dec. 4  Wednesday Dec. 6 Thursday, Dec. 7  Friday, Dec. 8 
LAB REPORT #3 (Fluorescence Microscope) due Monday, Dec. 4, by 12:00 noon. 
14  Tuesday, Dec. 12 Thursday, Dec. 14 
Monday, Dec. 11  Wednesday, Dec. 13 
LAB REPORT #4 (Optical Trapping) due Monday, Dec. 11, by 12:00 noon. Tuesday, Dec. 12 (in class) 