20.949/F10:Schedule: Difference between revisions

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(New page: Lecture schedule 1. September 9: Overview of Synthetic Biology 2. September 14: Biophysical Models of Basic Biological Processes I 3. September 16: Biophysical Models of Ba...)
 
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Lecture schedule
{{Template:20.949/F10}}
1. September 9:        Overview of Synthetic Biology
 
2. September 14:    Biophysical Models of Basic Biological Processes I
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3. September 16:    Biophysical Models of Basic Biological Processes II
 
4. September 21:    Noise propagation and regulatory feedback
{| border="1" cellpadding="4" cellspacing="0" style="border:#c9c9c9 1px solid; margin: 1em 1em 1em 0; border-collapse: collapse; width:710px" <!-- This line here formats your table for you.  Change the code to change the formatting of your table.-->
5. September 23:    Computational modeling of genetic circuits (ODE, stochastic, Lambda)
| align="center" style="background:#f0f0f0;"|'''Date'''
6. September 28:      Dynamics of Biological Circuits -- Feed-forward motifs
| align="center" style="background:#f0f0f0;"|'''Topic'''
7. September 30:    Dynamics of Biological Circuits -- Toggle switches and bistability  
| align="center" style="background:#f0f0f0;"|'''Assignment'''
8. September 30:      Dynamics of Biological Circuits -- Oscillators
|--
10. October 5:          Dynamics of Biological Circuits -- Bifurcation analysis / phase space
| September 9
11. October 7:      Cell-cell communication I
| Overview of Synthetic Biology
11. October 12:      Cell-cell communication II
|
12. October 14:    RNA regulation (bacterial / microbial)  
|--
13. October 19:        RNA regulation (Eukarytoic)
| September 14
14. October 21:        Protein tagging: secretion / localization / degradation
| Biophysical Models of Basic Biological Processes I
15. October 26:        Protein engineering (modular design of proteins) to explore functional
|
16. October 28:        Protein-protein interaction networks  
|--
17. November 2:        Metabolic engineering
| September 16
18. November 4:        Interfacing to other cell functions
| Biophysical Models of Basic Biological Processes II
19. November 9:        Principles of design -- from parts to modules to systems I
|
20. November 11:        Principles of design -- from parts to modules to systems II
|--
21. November 16:        Principles of design -- from parts to modules to systems III
| September 21
22. November 18:        Principles of design -- from parts to modules to systems IV
| Noise propagation and regulatory feedback
23. November 23:        Directed evolution (parts & circuits)
|
24. November 30:        History of DNA manipulation
|--
25. December 2:        Advanced DNA design & cloning
| September 23
26. December 7:        Synthetic biology applications
| Computational modeling of genetic circuits (ODE, stochastic, Lambda)
27. December 9:        Synthetic Life / Perspectives & challenges
|
28. December X-Y:    Term project presentations
|--
| September 28
| Dynamics of Biological Circuits -- Feed-forward motifs
|
|--
| September 30
| Dynamics of Biological Circuits -- Toggle switches and bistability  
|
|--
| September 30
| Dynamics of Biological Circuits -- Oscillators
|
|--
| October 5
| Dynamics of Biological Circuits -- Bifurcation analysis / phase space
|
|--
| October 7
| Cell-cell communication I
|
|--
| October 12
| Cell-cell communication II
|
|--
| October 14
| RNA regulation (bacterial / microbial)  
|
|--
| October 19
| RNA regulation (Eukarytoic)
|
|--
| October 21
| Protein tagging: secretion / localization / degradation
|
|--
| October 26
| Protein engineering (modular design of proteins) to explore functional
|
|--
| October 28
| Protein-protein interaction networks  
|
|--
| November 2
| Metabolic engineering
|
|--
| November 4
| Interfacing to other cell functions
|
|--
| November 9
| Principles of design -- from parts to modules to systems I
|
|--
| November 11
| Principles of design -- from parts to modules to systems II
|
|--
| November 16
| Principles of design -- from parts to modules to systems III
|
|--
| November 18
| Principles of design -- from parts to modules to systems IV
|
|--
| November 23
| Directed evolution (parts & circuits)
|
|--
| November 30
| History of DNA manipulation
|
|--
| December 2
| Advanced DNA design & cloning
|
|--
| December 7
| Synthetic biology applications
|
|--
| December 9
| Synthetic Life / Perspectives & challenges
|
|--
| December X-Y
| Term project presentations
|
|--
|}
 
</div>

Latest revision as of 07:13, 1 September 2010

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Date Topic Assignment
September 9 Overview of Synthetic Biology
September 14 Biophysical Models of Basic Biological Processes I
September 16 Biophysical Models of Basic Biological Processes II
September 21 Noise propagation and regulatory feedback
September 23 Computational modeling of genetic circuits (ODE, stochastic, Lambda)
September 28 Dynamics of Biological Circuits -- Feed-forward motifs
September 30 Dynamics of Biological Circuits -- Toggle switches and bistability
September 30 Dynamics of Biological Circuits -- Oscillators
October 5 Dynamics of Biological Circuits -- Bifurcation analysis / phase space
October 7 Cell-cell communication I
October 12 Cell-cell communication II
October 14 RNA regulation (bacterial / microbial)
October 19 RNA regulation (Eukarytoic)
October 21 Protein tagging: secretion / localization / degradation
October 26 Protein engineering (modular design of proteins) to explore functional
October 28 Protein-protein interaction networks
November 2 Metabolic engineering
November 4 Interfacing to other cell functions
November 9 Principles of design -- from parts to modules to systems I
November 11 Principles of design -- from parts to modules to systems II
November 16 Principles of design -- from parts to modules to systems III
November 18 Principles of design -- from parts to modules to systems IV
November 23 Directed evolution (parts & circuits)
November 30 History of DNA manipulation
December 2 Advanced DNA design & cloning
December 7 Synthetic biology applications
December 9 Synthetic Life / Perspectives & challenges
December X-Y Term project presentations
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