Abhishek Tiwari:Bioinformatics Toolkits: Difference between revisions
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=Bioinformatics Toolkits= | =Bioinformatics Toolkits= | ||
Geneious http://www.geneious.com/ | '''Geneious''' http://www.geneious.com/ | ||
Geneious(Free for academic use) provides sophisticated genome & proteome research tools, protein or molecular visualization, publication literature search and storage tools and more, with revolutionary usability.Plugins extend Geneious's functionality by providing additional document importers or exporters, document viewers, database access or operations such as alignment or tree building. Anyone can write plugins using our freely available Public API – in fact, most of Geneious's standard functionality is internally provided by plugins. | Geneious(Free for academic use) provides sophisticated genome & proteome research tools, protein or molecular visualization, publication literature search and storage tools and more, with revolutionary usability.Plugins extend Geneious's functionality by providing additional document importers or exporters, document viewers, database access or operations such as alignment or tree building. Anyone can write plugins using our freely available Public API – in fact, most of Geneious's standard functionality is internally provided by plugins. | ||
'''BioPerl''' www.bioperl.org | |||
'''BioJava''' http://biojava.org | |||
BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It include objects for manipulating biological sequences, file parsers, DAS client and server support, access to BioSQL and Ensembl databases, tools for making sequence analysis GUIs and powerful analysis and statistical routines including a dynamic programming toolkit. | |||
BioJava is used in several real-world bioinformatics applications and has been used for bioinformatics analysis in a number of published studies. For example Biosense a commercial informatics offering from Inforsense that uses BioJava under the hood. | |||
Revision as of 23:23, 18 December 2006
Bioinformatics Toolkits
Geneious http://www.geneious.com/
Geneious(Free for academic use) provides sophisticated genome & proteome research tools, protein or molecular visualization, publication literature search and storage tools and more, with revolutionary usability.Plugins extend Geneious's functionality by providing additional document importers or exporters, document viewers, database access or operations such as alignment or tree building. Anyone can write plugins using our freely available Public API – in fact, most of Geneious's standard functionality is internally provided by plugins.
BioPerl www.bioperl.org
BioJava http://biojava.org
BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It include objects for manipulating biological sequences, file parsers, DAS client and server support, access to BioSQL and Ensembl databases, tools for making sequence analysis GUIs and powerful analysis and statistical routines including a dynamic programming toolkit.
BioJava is used in several real-world bioinformatics applications and has been used for bioinformatics analysis in a number of published studies. For example Biosense a commercial informatics offering from Inforsense that uses BioJava under the hood.
