Alex A. Cardenas Week 12: Difference between revisions

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==Data Sets==
 
*[[Media:E-BUGS-65.README112.txt |  ReadMe]]
 
==Today==
*Today we are looking at our data sets and seeing which ones were used in the microarray.
*Going back to last weeks lab and answering questions.
 
===Master Spreadsheet===
*So far master spreadsheet can be found [[Media:MasterSpreadsheet.xls | here]].
 
*[[Media:Alex_Robert_Zeb_MasterSpreadSheet_20111130_CA.xls|Master Spread Sheet]]
 
===Data Sets===
*[[Media:ReadMeNew.txt |  ReadMe]]  
*[[Media:E-BUGS-65.processed.1.zip | Processed]]
*[[Media:E-BUGS-65.processed.1.zip | Processed]]
*[[Media:E-BUGS-65.raw.1.zip | Raw]]
*[[Media:E-BUGS-65.raw.1.zip | Raw]]
*[[Media:E-BUGS-65.sdrf.xls | SRDF]]
*[[Media:E-BUGS-65.sdrf.xls | SRDF]]


==Array Data Sets==
===Array Data Sets===
*[[Media:A-BUGS-17.README.txt | ReadMe]]
*[[Media:A-BUGS-17.README.txt | ReadMe]]
*[[Media:A-BUGS-17.adf.xls | ADF]]
*[[Media:A-BUGS-17.adf.xls | ADF]]
===From Methods Section of Microarray===
#What samples did they collect and use for the microarray experiment?
#*Three biological replicates of control culture and ranalexin. A total of six arrays for analysis were obtained.
#How many microarray chips did they hybridize in the experiment?
#*2
#Which samples were paired to hybridize on the chip?
#*Ranalexin (A1) and MRSA-252(A2). MRSA-252(A1) and Ranalexin(A2).
#Which was labeled red (Cy5)? Which was labeled green (Cy3)?
#*Ranalexin (A1) and MRSA-252(A2) was labeled red (Cy5).
#*Ranalexin (A2) and MRSA-252(A1) was labeled green (Cy3).
#How many replicates did they perform of each type?
#*They performed 2 technical replicates of each type.
#Arrary data file names found below
#*Ranalexin (A1) - MBAD_12054.txt
#*Ranalexin (A2) - MBAD_12061.txt
#*MRSA-252 (A1) - MBAD_12055.txt
#*MRSA-252 (A2) - MBAD_12060.txt
#Spreadsheet can be found in the link above.


==Links==
==Links==
*[[User:Alex A. Cardenas|Alex A. Cardenas]]
*[[User:Alex A. Cardenas|Alex A. Cardenas]]
*[[BIOL368/F11:Week 11|Week 11 Assignment]]
*[[BIOL368/F11:Week 12|Week 12 Assignment]]
*[[Alex A. Cardenas Week 2]]
*[[Alex A. Cardenas Week 2]]
*[[Alex A. Cardenas Week 3]]
*[[Alex A. Cardenas Week 3]]
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*[[Alex A. Cardenas Week 11]]
*[[Alex A. Cardenas Week 11]]
*[[Alex A. Cardenas Week 12]]
*[[Alex A. Cardenas Week 12]]
*[[Alex A. Cardenas Week 13]]
*[[Alex A. Cardenas Week 14]]
*[[Alex A. Cardenas Week 14]]
*[[BIOL368/F11:Class Journal Week 1|Class Journal Week 1]]
*[[BIOL368/F11:Class Journal Week 1|Class Journal Week 1]]
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*[[BIOL368/F11:Class Journal Week 11|Class Journal Week 11]]
*[[BIOL368/F11:Class Journal Week 11|Class Journal Week 11]]
*[[BIOL368/F11:Class Journal Week 12|Class Journal Week 12]]
*[[BIOL368/F11:Class Journal Week 12|Class Journal Week 12]]
*[[BIOL368/F11:Class Journal Week 13|Class Journal Week 13]]
*[[BIOL368/F11:Class Journal Week 14|Class Journal Week 14]]
*[[BIOL368/F11:Class Journal Week 14|Class Journal Week 14]]


[[Category:BIOL368/F11]]
[[Category:BIOL368/F11]]

Latest revision as of 11:08, 30 November 2011


Today

  • Today we are looking at our data sets and seeing which ones were used in the microarray.
  • Going back to last weeks lab and answering questions.

Master Spreadsheet

  • So far master spreadsheet can be found here.

Data Sets

Array Data Sets

From Methods Section of Microarray

  1. What samples did they collect and use for the microarray experiment?
    • Three biological replicates of control culture and ranalexin. A total of six arrays for analysis were obtained.
  2. How many microarray chips did they hybridize in the experiment?
    • 2
  3. Which samples were paired to hybridize on the chip?
    • Ranalexin (A1) and MRSA-252(A2). MRSA-252(A1) and Ranalexin(A2).
  4. Which was labeled red (Cy5)? Which was labeled green (Cy3)?
    • Ranalexin (A1) and MRSA-252(A2) was labeled red (Cy5).
    • Ranalexin (A2) and MRSA-252(A1) was labeled green (Cy3).
  5. How many replicates did they perform of each type?
    • They performed 2 technical replicates of each type.
  6. Arrary data file names found below
    • Ranalexin (A1) - MBAD_12054.txt
    • Ranalexin (A2) - MBAD_12061.txt
    • MRSA-252 (A1) - MBAD_12055.txt
    • MRSA-252 (A2) - MBAD_12060.txt
  7. Spreadsheet can be found in the link above.

Links

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