Alex A. Cardenas Week 14: Difference between revisions

Revision as of 16:53, 30 November 2011

Computed the averages for A,B, and C along with multiplying all the c3/c5 by negative 1.
Worked through the protocall and computed the Tstat values and the Pvalues along with changing some of the columns and rows.
Filtered out the Pvalue column to find how many genes Pvalues were less than 0.05, 0.01, and 0.001.
- Pvalue < 0.05 - 680 genes.
- Pvalue < 0.01 - 228 genes.
- Pvalue < 0.001 - 26 genes.
The new spreadsheet can be found here.
More modified spreadsheet can be found here.
When making the geneMAPP, there were 132 errors found but this is insignificant because this is out of 2740 genes.
geneMAPP excel file can be found here. The text file for geneMAPP can be found here.
We looked at the top 10 genes with the lowest Pvalues, and the excel file can be found here.
We also looked at the top 10 Gene Ontology terms and those can be found below.
1. Pathogenesis
2. Multi-organism process
3. External encapsulating structure
4. High-affinity iron ion transport
5. Extracellular region
6. Protein complex binding
7. Immunoglobin binding
8. Respiratory chain
9. Periplasmic space

@@ Line 11: / Line 11: @@
 *geneMAPP excel file can be found [[Media:Mapfinderresults-Criterion1-GOrwaaa.xlsx | here]]. The text file for geneMAPP can be found [[Media:Mapfinderresults-Criterion1-GOrwaaaaaa.txt | here]].
 *We looked at the top 10 genes with the lowest Pvalues, and the excel file can be found [[Media:TopTen.xlsx | here]].
-*
+*We also looked at the top 10 Gene Ontology terms and those can be found below.
+*#Pathogenesis
+*#Multi-organism process
+*#External encapsulating structure
+*#High-affinity iron ion transport
+*#Extracellular region
+*#Protein complex binding
+*#Immunoglobin binding
+*#Respiratory chain
+*#Periplasmic space
 ==Links==