Alex A. Cardenas Week 14

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(Electronic Notebook)
(Electronic Notebook)
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*The new spreadsheet can be found [[Media:AverageSpreadsheet.xlsx | here]].
*The new spreadsheet can be found [[Media:AverageSpreadsheet.xlsx | here]].
*More modified spreadsheet can be found [[Media:AllSpreadsheet.xlsx | here]].
*More modified spreadsheet can be found [[Media:AllSpreadsheet.xlsx | here]].
 +
*When making the geneMAPP, there were 132 errors found but this is insignificant because this is out of 2740 genes.
*geneMAPP excel file can be found [[Media:Mapfinderresults-Criterion1-GOrwaaa.xlsx | here]]. The text file for geneMAPP can be found [[Media:Mapfinderresults-Criterion1-GOrwaaaaaa.txt | here]].
*geneMAPP excel file can be found [[Media:Mapfinderresults-Criterion1-GOrwaaa.xlsx | here]]. The text file for geneMAPP can be found [[Media:Mapfinderresults-Criterion1-GOrwaaaaaa.txt | here]].
 +
*We looked at the top 10 genes with the lowest Pvalues and we obtained and the excel file for that can be found [[Media:TopTen.xlsx | here]].

Revision as of 19:43, 30 November 2011

Electronic Notebook

  • Computed the averages for A,B, and C along with multiplying all the c3/c5 by negative 1.
  • Worked through the protocall and computed the Tstat values and the Pvalues along with changing some of the columns and rows.
  • Filtered out the Pvalue column to find how many genes Pvalues were less than 0.05, 0.01, and 0.001.
    • Pvalue < 0.05 - 680 genes.
    • Pvalue < 0.01 - 228 genes.
    • Pvalue < 0.001 - 26 genes.
  • The new spreadsheet can be found here.
  • More modified spreadsheet can be found here.
  • When making the geneMAPP, there were 132 errors found but this is insignificant because this is out of 2740 genes.
  • geneMAPP excel file can be found here. The text file for geneMAPP can be found here.
  • We looked at the top 10 genes with the lowest Pvalues and we obtained and the excel file for that can be found here.
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