# Alex A. Cardenas Week 14

(Difference between revisions)
 Revision as of 18:13, 30 November 2011 (view source) (→Electronic Notebook)← Previous diff Revision as of 18:43, 30 November 2011 (view source) (→Electronic Notebook)Next diff → Line 8: Line 8: *The new spreadsheet can be found [[Media:AverageSpreadsheet.xlsx | here]]. *The new spreadsheet can be found [[Media:AverageSpreadsheet.xlsx | here]]. *More modified spreadsheet can be found [[Media:AllSpreadsheet.xlsx | here]]. *More modified spreadsheet can be found [[Media:AllSpreadsheet.xlsx | here]]. + *When making the geneMAPP, there were 132 errors found but this is insignificant because this is out of 2740 genes. *geneMAPP excel file can be found [[Media:Mapfinderresults-Criterion1-GOrwaaa.xlsx | here]]. The text file for geneMAPP can be found [[Media:Mapfinderresults-Criterion1-GOrwaaaaaa.txt | here]]. *geneMAPP excel file can be found [[Media:Mapfinderresults-Criterion1-GOrwaaa.xlsx | here]]. The text file for geneMAPP can be found [[Media:Mapfinderresults-Criterion1-GOrwaaaaaa.txt | here]]. + *We looked at the top 10 genes with the lowest Pvalues and we obtained and the excel file for that can be found [[Media:TopTen.xlsx | here]].

## Electronic Notebook

• Computed the averages for A,B, and C along with multiplying all the c3/c5 by negative 1.
• Worked through the protocall and computed the Tstat values and the Pvalues along with changing some of the columns and rows.
• Filtered out the Pvalue column to find how many genes Pvalues were less than 0.05, 0.01, and 0.001.
• Pvalue < 0.05 - 680 genes.
• Pvalue < 0.01 - 228 genes.
• Pvalue < 0.001 - 26 genes.
• The new spreadsheet can be found here.
• More modified spreadsheet can be found here.
• When making the geneMAPP, there were 132 errors found but this is insignificant because this is out of 2740 genes.
• geneMAPP excel file can be found here. The text file for geneMAPP can be found here.
• We looked at the top 10 genes with the lowest Pvalues and we obtained and the excel file for that can be found here.