Alex A. Cardenas Week 6: Difference between revisions

Revision as of 15:33, 5 October 2011

The DNA is the region of molocules that does not enlarge when you switch to the space fill model. The hOGG1 protein is the part of the AA sequence that enlarges when you switch to the space filled model.
[Cys]241:ASG #2406. The sulfer atom is located in the side chain of the amino acid.

 105 THR
 106 LEU
 107 ALA
 108 GLN 
 109 LEU
 110 TYR
 111 HIS
 112 HIS
 113 TRP
 114 GLY
 115 SER
 116 VAL
 117 ASP

Yes there are helicies (pink), sheets (yellow), and coils (blue). The amino acids 105-117 fold into helices. Here is the image
I would say that the negatively charged amino acids are located on the outside of this protein. This would suggest that the cellular enviornment surrounding this protein is hydrophillic because it would be interacting with the cellular enviorment. I would also say that the hydrophobic regions could be found burried inside the protein. Here is the image:
.
You are more likely to find the amino acids that recognize damaged guanine bases withthin hOGG1 in helix 16 because it is closer to the DNA sequence. This is the imaage .

@@ Line 19: / Line 19: @@
 VAL
 ASP
-#Yes there are helicies (pink), sheets (yellow), and coils (blue). The amino acids 105-117 fold into helices.
+#Yes there are helicies (pink), sheets (yellow), and coils (blue). The amino acids 105-117 fold into helices. Here is the image [[Image:Picture 10.png]]
-#I would say that the negatively charged amino acids are located on the outside of this protein. This would suggest that the cellular enviornment surrounding this protein is hydrophillic because it would be interacting with the cellular enviorment. I would also say that the hydrophobic regions could be found burried inside the protein.
+#I would say that the negatively charged amino acids are located on the outside of this protein. This would suggest that the cellular enviornment surrounding this protein is hydrophillic because it would be interacting with the cellular enviorment. I would also say that the hydrophobic regions could be found burried inside the protein. Here is the image: [[Image:Picture 11.png]]
 #[[image:Picture_8.png]].
 #You are more likely to find the amino acids that recognize damaged guanine bases withthin hOGG1 in helix 16 because it is closer to the DNA sequence. This is the imaage [[Image:Picture 9.png]].