Alex A. Cardenas Week 8: Difference between revisions

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==Chapter 5==
==Chapter 5==
*ORFing DNA sequence. Retrieved sequence from clicking on FASTA in UniProtKB and posted it in open reading frame finder. 6 parallel horizontal bars are displayed.
*ORFing DNA sequence. Retrieved sequence from clicking on FASTA in UniProtKB and posted it in open reading frame finder. 6 parallel horizontal bars are displayed.
*Here is what it displayed [[Picture_4.png]]
*Here is what it displayed [[image:Picture_4.png]]


==Links==
==Links==

Revision as of 16:23, 19 October 2011

Chapter 2

  • Retreiving protein sequences for envelope glycoprotein gp160 (pp. 42-51)
  • Went to www.expasy.org/sprot/.
  • Envelope glycoprotein gp160 was typed into search box and retreived.
    • Entry Name - ENV_HV1C4
    • Primary Accession Number - P05879
  • FASTA format was viewed (FATSA - a sequence alignment-and-database-scanning program). New window appeared with all amino acids in the protein sequence.

  • Related protein sequences retrieved by advanced search methods.

Chapter 4

  • Reading a SWISS-PROT entry (pp. 110-123). The link can be found [here].
  • Went through steps in deciphering the envelope glycoprotein gp160 swiss-prot entry. Information on entry name, primary accession number, protein name, gene name, etc., can be found in the link above.
  • 8 References were found in the article.
  • The Cross references - not all cross references were displayed online as they were in the book.

Chapter 5

  • ORFing DNA sequence. Retrieved sequence from clicking on FASTA in UniProtKB and posted it in open reading frame finder. 6 parallel horizontal bars are displayed.
  • Here is what it displayed

Links

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