Alexander Kanitz: Difference between revisions
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==Contact | ==Contact information== | ||
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*ETH Zurich<br/> | *ETH Zurich<br/> | ||
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*Email: [mailto:alexander.kanitz@pharma.ethz.ch alexander.kanitz@pharma.ethz.ch] | *Email: [mailto:alexander.kanitz@pharma.ethz.ch alexander.kanitz@pharma.ethz.ch] | ||
==Research interests== | ==Research interests== | ||
*Gene regulatory networks | |||
*Laboratory automation / informatics ("Science 2.0") | |||
*Synthetic biology | |||
==Current position== | ==Current position== | ||
I am a | '''I am currently looking for a post-doc position''' that allows me to apply and further develop my bioinformatics skills, ideally for the description of gene regulatory networks or the development of lab automation software/services. | ||
== | ==Research experience== | ||
'''11-2007 – 12-2011'''<br/> | |||
'''Pharmacogenomics Unit, Institute of Pharmaceutical Sciences, ETH Zurich, Switzerland'''<br/> | |||
Supervision: Prof. Dr. André Gerber, Prof. Dr. Michael Detmar<br/> | |||
Project title: “Tools and strategies for the unraveling of post-transcriptional gene regulatory networks”<br/><br/> | |||
'''12-2006 – 02-2007'''<br/> | |||
'''Swammerdam Institute of Life Sciences, University of Amsterdam, The Netherlands'''<br/> | |||
Supervision: Prof. Dr. Stanley Brul, Dr. Hans van der Spek<br/> | |||
Project title: “Status, complications and future prospects of highly active antiretroviral therapy”<br/><br/> | |||
'''02-2006 – 07-2006'''<br/> | |||
'''Institute of Molecular and Cell Biology, Agency for Science, Technology and Research (A*STAR), Singapore'''<br/> | |||
Supervision: Prof. Dr. Vinay Tergaonkar<br/> | |||
Project title: “Characterization of a putative IKK2 in Danio Rerio”<br/><br/> | |||
'''10-2004 – 09-2005'''<br/> | |||
'''Department of Hepatology, Academic Medical Center, University of Amsterdam, The Netherlands'''<br/> | |||
Supervision: Prof. Dr. Jurgen Seppen<br/> | |||
Project titles: ”Lentiviral gene transfer of chemically inducible hepatocyte growth factor receptor” and “Liver re-targeting of lentiviral particles”<br/><br/> | |||
'''03-2004 – 07-2004'''<br/> | |||
'''Institute of Biological Chemistry, Technical University of Munich, Germany'''<br/> | |||
Supervision: Prof. Dr. Arne Skerra, Dr. habil. Ingo Korndörfer<br/> | |||
Project title: ”Production and characterization of the enzymatically active domain of the endolysine Ply500 isolated from Listeria monocytogenes bacteriophage A 500”<br/><br/> | |||
'''08-2003 – 10-2003 & 07-2004 – 08-2004'''<br/> | |||
'''Traineeships Research and Development at Micromet, Inc., Munich, Germany''' | |||
==Acquired skills== | |||
Experienced with transcriptomics (microarray) and proteomics (mass spectrometry) techniques as well as standard biochemical, molecular and cell biological techniques (cell culturing, cloning, Western/Northern blotting, immunopurification, qPCR, FACS, immunofluorescence, in vitro enzymatic and binding assays); used model systems: human cell lines, zebrafish, E. coli, P. pastoris, lentiviral vectors; profound knowledge of statistical and bioinformatics-based analytical methods (intermediate to advanced knowledge of Perl); highly developed scientific writing, data preparation, presentation and publication skills | |||
==Education== | ==Education== | ||
'''Molecular Life Sciences''', Ph.D., ETH Zurich, Switzerland (December 2011)<br/> | |||
'''Medical Biochemistry''', M.Sc., University of Amsterdam, The Netherlands (March 2007)<br/> | |||
'''Molecular Biotechnology''', B.Sc., Technical University of Munich, Germany (July 2004) | |||
==Expertise== | |||
Profound knowledge of gene regulatory systems and networks with a particular focus on post-transcriptional gene regulation; strong background in biochemistry, molecular biology, cell biology; familiarity with bioinformatics and biotechnology concepts and methods | |||
==Publications== | ==Publications== | ||
<!-- Replace the PubMed ID's ("pmid=#######") below with the PubMed ID's for your publications. You can add or remove lines as needed --> | <!-- Replace the PubMed ID's ("pmid=#######") below with the PubMed ID's for your publications. You can add or remove lines as needed --> | ||
< | *<u>Kanitz A</u>, Gerber AP. (2010). '''Circuitry of mRNA regulation'''. ''Wiley Interdiscip Rev Syst Biol Med. 2(2):245-51'' | ||
== | *Galgano A, Forrer M, Jaskiewicz L, <u>Kanitz A</u>, Zavolan M, Gerber AP. (2008). '''Comparative analysis of mRNA targets for human PUF-family proteins suggests extensive interaction with the miRNA regulatory system'''. ''PLoS One. 3(9):e3164'' | ||
*[http://gerber.openwetware.org Gerber Lab | |||
*[http://www.pharma.ethz.ch/institute_groups/pharmacogenomics/ | *Korndörder IP, <u>Kanitz A</u>, Danzer J, Zimmer M, Loessner MJ, Skerra A. (2008). '''Structural analysis of the L-alanoyl-D-glutamate endopeptidase domain of Listeria bacteriophage endolysin Ply500 reveals a member of the LAS peptidase family'''. ''Acta Crystallogr D Biol Crystallogr. 64(Pt 6):644-50'' | ||
*Markusic DM, <u>Kanitz A</u>, Oude-Elferink RP, Seppen J. (2007). '''Preferential gene transfer of lentiviral vectors to liver-derived cells, using a hepatitis B peptide displayed on GP64'''. ''Hum Gene Ther. 18(7):673-9'' | |||
==Links== | |||
*[http://gerber.openwetware.org Gerber Lab, Institute of Biosciences and Medicine, University of Surrey, UK] | |||
*[http://www.pharma.ethz.ch/institute_groups/pharmacogenomics/ Detmar Lab, Institute of Pharmaceutical Sciences, ETH Zurich, Switzerland] | |||
*[http://www.lifescience-graduateschool.ch/ Life Science Zurich Graduate School] | *[http://www.lifescience-graduateschool.ch/ Life Science Zurich Graduate School] | ||
*[http://www.imcb.a-star.edu.sg/php/vinayt.php Tergaonkar Lab | *[http://www.imcb.a-star.edu.sg/php/vinayt.php Tergaonkar Lab, Institute of Molecular and Cell Biology, Singapore] | ||
*[http://www.lrz-muenchen.de/~Biologische-Chemie/ Skerra Lab | *[http://www.lrz-muenchen.de/~Biologische-Chemie/ Skerra Lab, Institute of Biological Chemistry, Technical University of Munich, Germany (German only)] | ||
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Revision as of 03:15, 5 March 2012
Contact information
Department of Chemistry and Applied Biosciences
Research interests
Current positionI am currently looking for a post-doc position that allows me to apply and further develop my bioinformatics skills, ideally for the description of gene regulatory networks or the development of lab automation software/services.
Research experience11-2007 – 12-2011
Acquired skillsExperienced with transcriptomics (microarray) and proteomics (mass spectrometry) techniques as well as standard biochemical, molecular and cell biological techniques (cell culturing, cloning, Western/Northern blotting, immunopurification, qPCR, FACS, immunofluorescence, in vitro enzymatic and binding assays); used model systems: human cell lines, zebrafish, E. coli, P. pastoris, lentiviral vectors; profound knowledge of statistical and bioinformatics-based analytical methods (intermediate to advanced knowledge of Perl); highly developed scientific writing, data preparation, presentation and publication skills
EducationMolecular Life Sciences, Ph.D., ETH Zurich, Switzerland (December 2011)
ExpertiseProfound knowledge of gene regulatory systems and networks with a particular focus on post-transcriptional gene regulation; strong background in biochemistry, molecular biology, cell biology; familiarity with bioinformatics and biotechnology concepts and methods
Publications
Links
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