Alexander Kanitz: Difference between revisions
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==Contact | ==Contact information== | ||
[[Image:Alex.JPG| | [[Image:Alex.JPG|120px|right]] | ||
*ETH Zurich<br/> | *ETH Zurich<br/> | ||
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[http://maps.google.com/maps/ms?hl=en&ie=UTF8&cd=1&geocode=0,47.407532,8.507197&t=h&msa=0&ll=47.40625,8.510113&spn=0.020099,0.055361&z=15&msid=113355392983449396379.0004620333c5385a6a663 Google Maps link]<br/> | [http://maps.google.com/maps/ms?hl=en&ie=UTF8&cd=1&geocode=0,47.407532,8.507197&t=h&msa=0&ll=47.40625,8.510113&spn=0.020099,0.055361&z=15&msid=113355392983449396379.0004620333c5385a6a663 Google Maps link]<br/> | ||
*Email: [mailto:alexander.kanitz@pharma.ethz.ch alexander.kanitz@pharma.ethz.ch] | *Email: [mailto:alexander.kanitz@pharma.ethz.ch alexander.kanitz@pharma.ethz.ch] | ||
==Research interests== | |||
*Gene regulatory networks | |||
*Laboratory automation / informatics ("Science 2.0") | |||
*Synthetic biology | |||
==Current position== | ==Current position== | ||
I am currently looking for a post-doc position that allows me to apply and further develop my bioinformatics skills, ideally for the description of gene regulatory networks. | '''I am currently looking for a post-doc position''' that allows me to apply and further develop my bioinformatics skills, ideally for the description of gene regulatory networks or the development of lab automation software/services. | ||
==Research | ==Research experience== | ||
'''11-2007 – 12-2011'''<br/> | '''11-2007 – 12-2011'''<br/> | ||
'''Pharmacogenomics Unit, Institute of Pharmaceutical Sciences, ETH Zurich, Switzerland'''<br/> | '''Pharmacogenomics Unit, Institute of Pharmaceutical Sciences, ETH Zurich, Switzerland'''<br/> | ||
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'''Traineeships Research and Development at Micromet, Inc., Munich, Germany''' | '''Traineeships Research and Development at Micromet, Inc., Munich, Germany''' | ||
==Acquired | |||
Experienced with transcriptomics (microarray) and proteomics (mass spectrometry) techniques as well as standard biochemical, molecular and cell biological techniques (cell culturing, cloning, Western/Northern blotting, immunopurification, qPCR, FACS, immunofluorescence, in vitro enzymatic and binding assays); used model systems: human cell lines, zebrafish, E. coli, P. pastoris, lentiviral vectors; profound knowledge of statistical and bioinformatics-based analytical methods; highly developed scientific writing, data preparation, presentation and publication skills | ==Acquired skills== | ||
Experienced with transcriptomics (microarray) and proteomics (mass spectrometry) techniques as well as standard biochemical, molecular and cell biological techniques (cell culturing, cloning, Western/Northern blotting, immunopurification, qPCR, FACS, immunofluorescence, in vitro enzymatic and binding assays); used model systems: human cell lines, zebrafish, E. coli, P. pastoris, lentiviral vectors; profound knowledge of statistical and bioinformatics-based analytical methods (intermediate to advanced knowledge of Perl); highly developed scientific writing, data preparation, presentation and publication skills | |||
==Education== | ==Education== | ||
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'''Medical Biochemistry''', M.Sc., University of Amsterdam, The Netherlands (March 2007)<br/> | '''Medical Biochemistry''', M.Sc., University of Amsterdam, The Netherlands (March 2007)<br/> | ||
'''Molecular Biotechnology''', B.Sc., Technical University of Munich, Germany (July 2004) | '''Molecular Biotechnology''', B.Sc., Technical University of Munich, Germany (July 2004) | ||
==Expertise== | ==Expertise== | ||
Profound knowledge of gene regulatory systems and networks with a particular focus on post-transcriptional gene regulation; strong background in biochemistry, molecular biology, cell biology; familiarity with bioinformatics and biotechnology concepts and methods | Profound knowledge of gene regulatory systems and networks with a particular focus on post-transcriptional gene regulation; strong background in biochemistry, molecular biology, cell biology; familiarity with bioinformatics and biotechnology concepts and methods | ||
==Publications== | ==Publications== | ||
<!-- Replace the PubMed ID's ("pmid=#######") below with the PubMed ID's for your publications. You can add or remove lines as needed --> | <!-- Replace the PubMed ID's ("pmid=#######") below with the PubMed ID's for your publications. You can add or remove lines as needed --> | ||
< | *<u>Kanitz A</u>, Gerber AP. (2010). '''Circuitry of mRNA regulation'''. ''Wiley Interdiscip Rev Syst Biol Med. 2(2):245-51'' | ||
*Galgano A, Forrer M, Jaskiewicz L, <u>Kanitz A</u>, Zavolan M, Gerber AP. (2008). '''Comparative analysis of mRNA targets for human PUF-family proteins suggests extensive interaction with the miRNA regulatory system'''. ''PLoS One. 3(9):e3164'' | |||
*Korndörder IP, <u>Kanitz A</u>, Danzer J, Zimmer M, Loessner MJ, Skerra A. (2008). '''Structural analysis of the L-alanoyl-D-glutamate endopeptidase domain of Listeria bacteriophage endolysin Ply500 reveals a member of the LAS peptidase family'''. ''Acta Crystallogr D Biol Crystallogr. 64(Pt 6):644-50'' | |||
</ | |||
*Markusic DM, <u>Kanitz A</u>, Oude-Elferink RP, Seppen J. (2007). '''Preferential gene transfer of lentiviral vectors to liver-derived cells, using a hepatitis B peptide displayed on GP64'''. ''Hum Gene Ther. 18(7):673-9'' | |||
==Links== | ==Links== | ||
*[http://gerber.openwetware.org Gerber Lab, ] | *[http://gerber.openwetware.org Gerber Lab, Institute of Biosciences and Medicine, University of Surrey, UK] | ||
*[http://www.pharma.ethz.ch/institute_groups/pharmacogenomics/ Institute of Pharmaceutical Sciences, ETH Zurich, Switzerland] | *[http://www.pharma.ethz.ch/institute_groups/pharmacogenomics/ Detmar Lab, Institute of Pharmaceutical Sciences, ETH Zurich, Switzerland] | ||
*[http://www.lifescience-graduateschool.ch/ Life Science Zurich Graduate School] | *[http://www.lifescience-graduateschool.ch/ Life Science Zurich Graduate School] | ||
*[http://www.imcb.a-star.edu.sg/php/vinayt.php Tergaonkar Lab, Institute of Molecular and Cell Biology, Singapore] | *[http://www.imcb.a-star.edu.sg/php/vinayt.php Tergaonkar Lab, Institute of Molecular and Cell Biology, Singapore] | ||
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Revision as of 03:15, 5 March 2012
Contact information
Department of Chemistry and Applied Biosciences
Research interests
Current positionI am currently looking for a post-doc position that allows me to apply and further develop my bioinformatics skills, ideally for the description of gene regulatory networks or the development of lab automation software/services.
Research experience11-2007 – 12-2011
Acquired skillsExperienced with transcriptomics (microarray) and proteomics (mass spectrometry) techniques as well as standard biochemical, molecular and cell biological techniques (cell culturing, cloning, Western/Northern blotting, immunopurification, qPCR, FACS, immunofluorescence, in vitro enzymatic and binding assays); used model systems: human cell lines, zebrafish, E. coli, P. pastoris, lentiviral vectors; profound knowledge of statistical and bioinformatics-based analytical methods (intermediate to advanced knowledge of Perl); highly developed scientific writing, data preparation, presentation and publication skills
EducationMolecular Life Sciences, Ph.D., ETH Zurich, Switzerland (December 2011)
ExpertiseProfound knowledge of gene regulatory systems and networks with a particular focus on post-transcriptional gene regulation; strong background in biochemistry, molecular biology, cell biology; familiarity with bioinformatics and biotechnology concepts and methods
Publications
Links
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