Alm:Research: Difference between revisions
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{{AlmLab}} | {{AlmLab}} | ||
Our lab develops computational and experimental methods to study | Our lab develops and uses computational and experimental methods to study microbial evolution and ecology. Our computational work uses microbial genome sequences, 16S and metagenomic data, as well as public bacterial genome sequences. ''Vibrio'' species are the model experimental system for our study of adaptation to environmental stress conditions. We collaborate with groups studying microbiomes, microbial ecology, genomics, environmental engineering, and human disease, among others. | ||
=== Current projects: === | === Current projects: === | ||
Patterns of selection in | *Microbiome community composition and dynamics | ||
*Human health and microbiomes | |||
Reconciliation of species and gene trees | *Detection of horizontal gene transfer among microbes | ||
*Evolution and reconstruction of ancient tRNA synthetases | |||
Evolution of microbial gene expression patterns | *Niche dynamics and evolution | ||
*Single-cell isolation and genome sequencing | |||
Genetic basis of stress adaptation in artificial environments | *Patterns of selection and recombination in bacterial genomes | ||
*Reconciliation of species and gene trees | |||
*Software for assembly and analysis of short read sequencing | |||
*Evolution of microbial gene expression patterns | |||
*Genetic basis of stress adaptation in artificial environments | |||
Latest revision as of 19:53, 27 October 2011
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Our lab develops and uses computational and experimental methods to study microbial evolution and ecology. Our computational work uses microbial genome sequences, 16S and metagenomic data, as well as public bacterial genome sequences. Vibrio species are the model experimental system for our study of adaptation to environmental stress conditions. We collaborate with groups studying microbiomes, microbial ecology, genomics, environmental engineering, and human disease, among others. Current projects:
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