Alm:Research - Revision history

ClarkeS at 02:53, 28 October 2011

2011-10-28T02:53:39Z

←Older revision		Revision as of 02:53, 28 October 2011
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	{{AlmLab}}		{{AlmLab}}

-	Our lab develops and uses computational and experimental methods to study microbial evolution and ecology. Our computational work uses microbial genome sequences, 16S and metagenomic data, as well as public bacterial genome sequences. ''Vibrio'' species are the model experimental system for our study of adaptation to environmental stress conditions.	+	Our lab develops and uses computational and experimental methods to study microbial evolution and ecology. Our computational work uses microbial genome sequences, 16S and metagenomic data, as well as public bacterial genome sequences. ''Vibrio'' species are the model experimental system for our study of adaptation to environmental stress conditions. We collaborate with groups studying microbiomes, microbial ecology, genomics, environmental engineering, and human disease, among others.

	=== Current projects: ===		=== Current projects: ===

ClarkeS at 02:51, 28 October 2011

2011-10-28T02:51:21Z

←Older revision		Revision as of 02:51, 28 October 2011
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	{{AlmLab}}		{{AlmLab}}

-	Our lab develops computational and experimental methods to study ~~selection in microbes~~. Our computational work uses ~~published~~ microbial genome sequences. ''Vibrio'' species are the model experimental system for our study of adaptation to environmental stress conditions.	+	Our lab develops and uses computational and experimental methods to study microbial evolution and ecology. Our computational work uses microbial genome sequences, 16S and metagenomic data, as well as public bacterial genome sequences. ''Vibrio'' species are the model experimental system for our study of adaptation to environmental stress conditions.

	=== Current projects: ===		=== Current projects: ===

	*Microbiome community composition and dynamics		*Microbiome community composition and dynamics
		+	*Human health and microbiomes
	*Detection of horizontal gene transfer among microbes		*Detection of horizontal gene transfer among microbes
	*Evolution and reconstruction of ancient tRNA synthetases		*Evolution and reconstruction of ancient tRNA synthetases

ClarkeS: /* Current projects: */

2011-10-28T02:48:42Z

Current projects:

←Older revision		Revision as of 02:48, 28 October 2011
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	=== Current projects: ===		=== Current projects: ===

-	Patterns of selection in ~~bacteria - [[Jesse Shapiro]]~~	+	*Microbiome community composition and dynamics
-		+	*Detection of horizontal gene transfer among microbes
-	Reconciliation of species and gene trees ~~- [[Lawrence David]]~~	+	*Evolution and reconstruction of ancient tRNA synthetases
-		+	*Niche dynamics and evolution
-	Evolution of microbial gene expression patterns ~~- [[BE Board:Sonia Timberlake \| Sonia Timberlake]]~~	+	*Single-cell isolation and genome sequencing
-		+	*Patterns of selection and recombination in bacterial genomes
-	Genetic basis of stress adaptation in artificial environments ~~- [[Sean Clarke]], [[Arne Materna]]~~	+	*Reconciliation of species and gene trees
-		+	*Software for assembly and analysis of short read sequencing
-	~~[[Alm:Genome_Assembly\|Genome Assembly of Solexa Data]] - various~~	+	*Evolution of microbial gene expression patterns
		+	*Genetic basis of stress adaptation in artificial environments

SoniaT: /* Current projects: */

2008-06-05T00:30:42Z

Current projects:

←Older revision		Revision as of 00:30, 5 June 2008
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	Genetic basis of stress adaptation in artificial environments - [[Sean Clarke]], [[Arne Materna]]		Genetic basis of stress adaptation in artificial environments - [[Sean Clarke]], [[Arne Materna]]
		+
		+	[[Alm:Genome_Assembly\|Genome Assembly of Solexa Data]] - various

ClarkeS at 15:25, 28 April 2008

2008-04-28T15:25:23Z

←Older revision		Revision as of 15:25, 28 April 2008
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	{{AlmLab}}		{{AlmLab}}

-	~~We are working on~~ computational and experimental methods to study selection in microbes. Our computational work uses published microbial genome sequences. ''Vibrio'' species are the model experimental system for our study of adaptation to environmental stress conditions.	+	Our lab develops computational and experimental methods to study selection in microbes. Our computational work uses published microbial genome sequences. ''Vibrio'' species are the model experimental system for our study of adaptation to environmental stress conditions.

	=== Current projects: ===		=== Current projects: ===

ClarkeS at 15:19, 28 April 2008

2008-04-28T15:19:03Z

←Older revision		Revision as of 15:19, 28 April 2008
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	{{AlmLab}}		{{AlmLab}}

-	We are working on computational and experimental methods to study selection in microbes. ~~The~~ computational work uses published microbial genome sequences. ~~Our experiments use~~ ''Vibrio'' species to study adaptation to environmental stress conditions.	+	We are working on computational and experimental methods to study selection in microbes. Our computational work uses published microbial genome sequences. ''Vibrio'' species are the model experimental system for our study of adaptation to environmental stress conditions.

	=== Current projects: ===		=== Current projects: ===

ClarkeS at 15:58, 1 October 2007

2007-10-01T15:58:09Z

←Older revision		Revision as of 15:58, 1 October 2007
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	{{AlmLab}}		{{AlmLab}}

-	We are working on computational and experimental methods to study selection in microbes. The computational work uses published ~~gene~~ sequences. Our experiments use ''Vibrio'' species to study adaptation to environmental stress conditions.	+	We are working on computational and experimental methods to study selection in microbes. The computational work uses published microbial genome sequences. Our experiments use ''Vibrio'' species to study adaptation to environmental stress conditions.
-		+

	=== Current projects: ===		=== Current projects: ===

ClarkeS: /* Current projects: */

2007-06-04T20:58:26Z

Current projects:

←Older revision		Revision as of 20:58, 4 June 2007
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	Reconciliation of species and gene trees - [[Lawrence David]]		Reconciliation of species and gene trees - [[Lawrence David]]

-	Evolution of microbial gene expression patterns - [[Sonia Timberlake]]	+	Evolution of microbial gene expression patterns - [[BE Board:Sonia Timberlake \| Sonia Timberlake]]

	Genetic basis of stress adaptation in artificial environments - [[Sean Clarke]], [[Arne Materna]]		Genetic basis of stress adaptation in artificial environments - [[Sean Clarke]], [[Arne Materna]]

ClarkeS: New page: {{AlmLab}} We are working on computational and experimental methods to study selection in microbes. The computational work uses published gene sequences. Our experiments use ''Vibrio'' sp...

2007-06-04T20:57:26Z

New page: {{AlmLab}} We are working on computational and experimental methods to study selection in microbes. The computational work uses published gene sequences. Our experiments use ''Vibrio'' sp...

New page

{{AlmLab}}

We are working on computational and experimental methods to study selection in microbes. The computational work uses published gene sequences. Our experiments use ''Vibrio'' species to study adaptation to environmental stress conditions.

=== Current projects: ===

Patterns of selection in bacteria - [[Jesse Shapiro]]

Reconciliation of species and gene trees - [[Lawrence David]]

Evolution of microbial gene expression patterns - [[Sonia Timberlake]]

Genetic basis of stress adaptation in artificial environments - [[Sean Clarke]], [[Arne Materna]]