Alverson:Publications - Revision history

Andrew J. Alverson at 15:11, 29 April 2013

Andrew J. Alverson — Mon, 29 Apr 2013 15:11:32 GMT

Andrew J. Alverson at 15:08, 29 April 2013

Andrew J. Alverson — Mon, 29 Apr 2013 15:08:24 GMT

←Older revision		Revision as of 15:08, 29 April 2013
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	==Angiosperm organelle genomes==		==Angiosperm organelle genomes==
		+	# Richardson, A. O., D. W. Rice, G. J. Young, <strong>A. J. Alverson</strong>, and J. D. Palmer. 2013. The "fossilized" mitochondrial genome of ''Liriodendron tulipifera'': Ancestral gene content and order, ancestral editing sites, and extraordinarily low mutation rate. BMC Biology. 11:29. [http://dx.doi.org/10.1186/1741-7007-11-29 doi: doi:10.1186/1741-7007-11-29]
		+	# Zheng, Y-H., <strong>A. J. Alverson</strong>, Q-F. Wang, and J. D. Palmer. 2013. A multi-locus chloroplast phylogeny of ''Cucurbita'': Evolution of domesticated and wild species. Journal of Systematics and Evolution. [http://dx.doi.org/10.1111/jse.12006 doi: 10.1111/jse.12006]
	# Sloan, D.B., <strong>A.J. Alverson</strong>, M. Wu, J.D. Palmer, and D.R. Taylor. Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence within the angiosperm genus ''Silene''. Genome Biology and Evolution 4, 294-306. [http://dx.doi.org/10.1093/gbe/evs006 doi: 10.1093/gbe/evs006].		# Sloan, D.B., <strong>A.J. Alverson</strong>, M. Wu, J.D. Palmer, and D.R. Taylor. Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence within the angiosperm genus ''Silene''. Genome Biology and Evolution 4, 294-306. [http://dx.doi.org/10.1093/gbe/evs006 doi: 10.1093/gbe/evs006].
	# Sloan, D.B., <strong>A.J. Alverson</strong>, J.P. Chuckalovcak, M. Wu, D.E. McCauley, J.D. Palmer, and D.R. Taylor. Rapid evolution of enormous, multichromosomal genomes in flowering plants. PLoS Biology 10(1): e1001241 [http://dx.doi.org/10.1371/journal.pbio.1001241 doi: 10.1371/journal.pbio.1001241] [http://f1000.com/13755957 F1000]		# Sloan, D.B., <strong>A.J. Alverson</strong>, J.P. Chuckalovcak, M. Wu, D.E. McCauley, J.D. Palmer, and D.R. Taylor. Rapid evolution of enormous, multichromosomal genomes in flowering plants. PLoS Biology 10(1): e1001241 [http://dx.doi.org/10.1371/journal.pbio.1001241 doi: 10.1371/journal.pbio.1001241] [http://f1000.com/13755957 F1000]

Andrew J. Alverson at 02:49, 16 November 2012

Andrew J. Alverson — Fri, 16 Nov 2012 02:49:06 GMT

←Older revision		Revision as of 02:49, 16 November 2012
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	==Angiosperm organelle genomes==		==Angiosperm organelle genomes==
-	# Sloan, D.B., <strong>A.J. Alverson</strong>, M. Wu, J.D. Palmer, and D.R. Taylor. Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence within the angiosperm genus ''Silene''. Genome Biology and Evolution 4, 294-306.[http://dx.doi.org/10.1093/gbe/evs006 doi: 10.1093/gbe/evs006].	+	# Sloan, D.B., <strong>A.J. Alverson</strong>, M. Wu, J.D. Palmer, and D.R. Taylor. Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence within the angiosperm genus ''Silene''. Genome Biology and Evolution 4, 294-306. [http://dx.doi.org/10.1093/gbe/evs006 doi: 10.1093/gbe/evs006].
	# Sloan, D.B., <strong>A.J. Alverson</strong>, J.P. Chuckalovcak, M. Wu, D.E. McCauley, J.D. Palmer, and D.R. Taylor. Rapid evolution of enormous, multichromosomal genomes in flowering plants. PLoS Biology 10(1): e1001241 [http://dx.doi.org/10.1371/journal.pbio.1001241 doi: 10.1371/journal.pbio.1001241] [http://f1000.com/13755957 F1000]		# Sloan, D.B., <strong>A.J. Alverson</strong>, J.P. Chuckalovcak, M. Wu, D.E. McCauley, J.D. Palmer, and D.R. Taylor. Rapid evolution of enormous, multichromosomal genomes in flowering plants. PLoS Biology 10(1): e1001241 [http://dx.doi.org/10.1371/journal.pbio.1001241 doi: 10.1371/journal.pbio.1001241] [http://f1000.com/13755957 F1000]
	# <strong>Alverson, A. J.</strong>, Rice, D. W., Dickinson, S., Barry, K., and Palmer, J. D. 2011. Origins and recombination of the bacterial-sized multichromosomal mitochondrial genome of cucumber (''Cucumis sativus''). The Plant Cell 23, 2499-2513. [http://dx.doi.org/10.1105/tpc.111.087189 doi: 10.1105/tpc.111.087189] [http://dx.doi.org/10.1105/tpc.111.230711 Featured article]		# <strong>Alverson, A. J.</strong>, Rice, D. W., Dickinson, S., Barry, K., and Palmer, J. D. 2011. Origins and recombination of the bacterial-sized multichromosomal mitochondrial genome of cucumber (''Cucumis sativus''). The Plant Cell 23, 2499-2513. [http://dx.doi.org/10.1105/tpc.111.087189 doi: 10.1105/tpc.111.087189] [http://dx.doi.org/10.1105/tpc.111.230711 Featured article]

Andrew J. Alverson at 02:47, 16 November 2012

Andrew J. Alverson — Fri, 16 Nov 2012 02:47:41 GMT

←Older revision		Revision as of 02:47, 16 November 2012
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	==Angiosperm organelle genomes==		==Angiosperm organelle genomes==
		+	# Sloan, D.B., <strong>A.J. Alverson</strong>, M. Wu, J.D. Palmer, and D.R. Taylor. Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence within the angiosperm genus ''Silene''. Genome Biology and Evolution 4, 294-306.[http://dx.doi.org/10.1093/gbe/evs006 doi: 10.1093/gbe/evs006].
	# Sloan, D.B., <strong>A.J. Alverson</strong>, J.P. Chuckalovcak, M. Wu, D.E. McCauley, J.D. Palmer, and D.R. Taylor. Rapid evolution of enormous, multichromosomal genomes in flowering plants. PLoS Biology 10(1): e1001241 [http://dx.doi.org/10.1371/journal.pbio.1001241 doi: 10.1371/journal.pbio.1001241] [http://f1000.com/13755957 F1000]		# Sloan, D.B., <strong>A.J. Alverson</strong>, J.P. Chuckalovcak, M. Wu, D.E. McCauley, J.D. Palmer, and D.R. Taylor. Rapid evolution of enormous, multichromosomal genomes in flowering plants. PLoS Biology 10(1): e1001241 [http://dx.doi.org/10.1371/journal.pbio.1001241 doi: 10.1371/journal.pbio.1001241] [http://f1000.com/13755957 F1000]
-	# Sloan, D.B., <strong>A.J. Alverson</strong>, M. Wu, J.D. Palmer, and D.R. Taylor. Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence within the angiosperm genus ''Silene''. Genome Biology and Evolution (in press) [http://dx.doi.org/10.1093/gbe/evs006 doi: 10.1093/gbe/evs006].
	# <strong>Alverson, A. J.</strong>, Rice, D. W., Dickinson, S., Barry, K., and Palmer, J. D. 2011. Origins and recombination of the bacterial-sized multichromosomal mitochondrial genome of cucumber (''Cucumis sativus''). The Plant Cell 23, 2499-2513. [http://dx.doi.org/10.1105/tpc.111.087189 doi: 10.1105/tpc.111.087189] [http://dx.doi.org/10.1105/tpc.111.230711 Featured article]		# <strong>Alverson, A. J.</strong>, Rice, D. W., Dickinson, S., Barry, K., and Palmer, J. D. 2011. Origins and recombination of the bacterial-sized multichromosomal mitochondrial genome of cucumber (''Cucumis sativus''). The Plant Cell 23, 2499-2513. [http://dx.doi.org/10.1105/tpc.111.087189 doi: 10.1105/tpc.111.087189] [http://dx.doi.org/10.1105/tpc.111.230711 Featured article]
	# <strong>Alverson, A. J.</strong>, Zhuo, S., Rice, D. W., Sloan, D. B., and Palmer, J. D. 2011. The mitochondrial genome of the legume ''Vigna radiata'' and the analysis of recombination across short mitochondrial repeats. PLoS ONE 6, e16404. [http://dx.doi.org/10.1371/journal.pone.0016404 doi: 10.1371/journal.pone.0016404]		# <strong>Alverson, A. J.</strong>, Zhuo, S., Rice, D. W., Sloan, D. B., and Palmer, J. D. 2011. The mitochondrial genome of the legume ''Vigna radiata'' and the analysis of recombination across short mitochondrial repeats. PLoS ONE 6, e16404. [http://dx.doi.org/10.1371/journal.pone.0016404 doi: 10.1371/journal.pone.0016404]

Andrew J. Alverson at 19:58, 18 March 2012

Andrew J. Alverson — Sun, 18 Mar 2012 19:58:39 GMT

←Older revision		Revision as of 19:58, 18 March 2012
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	==Angiosperm organelle genomes==		==Angiosperm organelle genomes==
	# Sloan, D.B., <strong>A.J. Alverson</strong>, J.P. Chuckalovcak, M. Wu, D.E. McCauley, J.D. Palmer, and D.R. Taylor. Rapid evolution of enormous, multichromosomal genomes in flowering plants. PLoS Biology 10(1): e1001241 [http://dx.doi.org/10.1371/journal.pbio.1001241 doi: 10.1371/journal.pbio.1001241] [http://f1000.com/13755957 F1000]		# Sloan, D.B., <strong>A.J. Alverson</strong>, J.P. Chuckalovcak, M. Wu, D.E. McCauley, J.D. Palmer, and D.R. Taylor. Rapid evolution of enormous, multichromosomal genomes in flowering plants. PLoS Biology 10(1): e1001241 [http://dx.doi.org/10.1371/journal.pbio.1001241 doi: 10.1371/journal.pbio.1001241] [http://f1000.com/13755957 F1000]
-	# Sloan, D.B., <strong>A.J. Alverson</strong>, M. Wu, J.D. Palmer, and D.R. Taylor. Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence within the angiosperm genus ''Silene''. Genome Biology and Evolution (in press).	+	# Sloan, D.B., <strong>A.J. Alverson</strong>, M. Wu, J.D. Palmer, and D.R. Taylor. Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence within the angiosperm genus ''Silene''. Genome Biology and Evolution (in press) [http://dx.doi.org/10.1093/gbe/evs006 doi: 10.1093/gbe/evs006].
	# <strong>Alverson, A. J.</strong>, Rice, D. W., Dickinson, S., Barry, K., and Palmer, J. D. 2011. Origins and recombination of the bacterial-sized multichromosomal mitochondrial genome of cucumber (''Cucumis sativus''). The Plant Cell 23, 2499-2513. [http://dx.doi.org/10.1105/tpc.111.087189 doi: 10.1105/tpc.111.087189] [http://dx.doi.org/10.1105/tpc.111.230711 Featured article]		# <strong>Alverson, A. J.</strong>, Rice, D. W., Dickinson, S., Barry, K., and Palmer, J. D. 2011. Origins and recombination of the bacterial-sized multichromosomal mitochondrial genome of cucumber (''Cucumis sativus''). The Plant Cell 23, 2499-2513. [http://dx.doi.org/10.1105/tpc.111.087189 doi: 10.1105/tpc.111.087189] [http://dx.doi.org/10.1105/tpc.111.230711 Featured article]
	# <strong>Alverson, A. J.</strong>, Zhuo, S., Rice, D. W., Sloan, D. B., and Palmer, J. D. 2011. The mitochondrial genome of the legume ''Vigna radiata'' and the analysis of recombination across short mitochondrial repeats. PLoS ONE 6, e16404. [http://dx.doi.org/10.1371/journal.pone.0016404 doi: 10.1371/journal.pone.0016404]		# <strong>Alverson, A. J.</strong>, Zhuo, S., Rice, D. W., Sloan, D. B., and Palmer, J. D. 2011. The mitochondrial genome of the legume ''Vigna radiata'' and the analysis of recombination across short mitochondrial repeats. PLoS ONE 6, e16404. [http://dx.doi.org/10.1371/journal.pone.0016404 doi: 10.1371/journal.pone.0016404]

Andrew J. Alverson: /* Angiosperm organelle genomes */

Andrew J. Alverson — Sun, 18 Mar 2012 19:52:59 GMT

Angiosperm organelle genomes

←Older revision		Revision as of 19:52, 18 March 2012
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	==Angiosperm organelle genomes==		==Angiosperm organelle genomes==
-	# Sloan, D.B., <strong>A.J. Alverson</strong>, J.P. Chuckalovcak, M. Wu, D.E. McCauley, J.D. Palmer, and D.R. Taylor. Rapid evolution of enormous, multichromosomal genomes in flowering plants. PLoS Biology 10(1): e1001241 [http://dx.doi.org/10.1371/journal.pbio.1001241 doi: 10.1371/journal.pbio.1001241] [F1000]	+	# Sloan, D.B., <strong>A.J. Alverson</strong>, J.P. Chuckalovcak, M. Wu, D.E. McCauley, J.D. Palmer, and D.R. Taylor. Rapid evolution of enormous, multichromosomal genomes in flowering plants. PLoS Biology 10(1): e1001241 [http://dx.doi.org/10.1371/journal.pbio.1001241 doi: 10.1371/journal.pbio.1001241] [http://f1000.com/13755957 F1000]
	# Sloan, D.B., <strong>A.J. Alverson</strong>, M. Wu, J.D. Palmer, and D.R. Taylor. Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence within the angiosperm genus ''Silene''. Genome Biology and Evolution (in press).		# Sloan, D.B., <strong>A.J. Alverson</strong>, M. Wu, J.D. Palmer, and D.R. Taylor. Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence within the angiosperm genus ''Silene''. Genome Biology and Evolution (in press).
	# <strong>Alverson, A. J.</strong>, Rice, D. W., Dickinson, S., Barry, K., and Palmer, J. D. 2011. Origins and recombination of the bacterial-sized multichromosomal mitochondrial genome of cucumber (''Cucumis sativus''). The Plant Cell 23, 2499-2513. [http://dx.doi.org/10.1105/tpc.111.087189 doi: 10.1105/tpc.111.087189] [http://dx.doi.org/10.1105/tpc.111.230711 Featured article]		# <strong>Alverson, A. J.</strong>, Rice, D. W., Dickinson, S., Barry, K., and Palmer, J. D. 2011. Origins and recombination of the bacterial-sized multichromosomal mitochondrial genome of cucumber (''Cucumis sativus''). The Plant Cell 23, 2499-2513. [http://dx.doi.org/10.1105/tpc.111.087189 doi: 10.1105/tpc.111.087189] [http://dx.doi.org/10.1105/tpc.111.230711 Featured article]
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	# Jansen, R. K., Kaittanis, C., Saski, C., Lee, S. B., Tomkins, J., <strong>Alverson, A. J.</strong>, and Daniell, H. 2006. Phylogenetic analyses of ''Vitis'' (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids. BMC Evol Biol 6. [http://dx.doi.org/10.1186/1471-2148-6-32 doi: 10.1186/1471-2148-6-32]		# Jansen, R. K., Kaittanis, C., Saski, C., Lee, S. B., Tomkins, J., <strong>Alverson, A. J.</strong>, and Daniell, H. 2006. Phylogenetic analyses of ''Vitis'' (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids. BMC Evol Biol 6. [http://dx.doi.org/10.1186/1471-2148-6-32 doi: 10.1186/1471-2148-6-32]
	# Jansen, R. K., Raubeson, L. A., Boore, J. L., DePamphilis, C. W., Chumley, T. W., Haberle, R. C., Wyman, S. K., <strong>Alverson, A. J.</strong>, Peery, R., Herman, S. J., Fourcade, H. M., Kuehl, J. V., McNeal, J. R., Leebens-Mack, J., and Cui, L. 2005. Methods for obtaining and analyzing whole chloroplast genome sequences. In Molecular Evolution: Producing the Biochemical Data, Part B, pp. 348-384. [http://dx.doi.org/10.1016/S0076-6879(05)95020-9 doi: 10.1016/S0076-6879(05)95020-9]		# Jansen, R. K., Raubeson, L. A., Boore, J. L., DePamphilis, C. W., Chumley, T. W., Haberle, R. C., Wyman, S. K., <strong>Alverson, A. J.</strong>, Peery, R., Herman, S. J., Fourcade, H. M., Kuehl, J. V., McNeal, J. R., Leebens-Mack, J., and Cui, L. 2005. Methods for obtaining and analyzing whole chloroplast genome sequences. In Molecular Evolution: Producing the Biochemical Data, Part B, pp. 348-384. [http://dx.doi.org/10.1016/S0076-6879(05)95020-9 doi: 10.1016/S0076-6879(05)95020-9]
-

	==Diatoms==		==Diatoms==

Andrew J. Alverson at 15:16, 22 February 2012

Andrew J. Alverson — Wed, 22 Feb 2012 15:16:28 GMT

←Older revision		Revision as of 15:16, 22 February 2012
Line 3:		Line 3:

	==Angiosperm organelle genomes==		==Angiosperm organelle genomes==
-	# Sloan, D.B., <strong>A.J. Alverson</strong>, J.P. Chuckalovcak, M. Wu, D.E. McCauley, J.D. Palmer, and D.R. Taylor. Rapid evolution of enormous, multichromosomal genomes in flowering plants. PLoS Biology 10(1): e1001241 [doi:10.1371/journal.pbio.1001241] [F1000]	+	# Sloan, D.B., <strong>A.J. Alverson</strong>, J.P. Chuckalovcak, M. Wu, D.E. McCauley, J.D. Palmer, and D.R. Taylor. Rapid evolution of enormous, multichromosomal genomes in flowering plants. PLoS Biology 10(1): e1001241 [http://dx.doi.org/10.1371/journal.pbio.1001241 doi: 10.1371/journal.pbio.1001241] [F1000]
	# Sloan, D.B., <strong>A.J. Alverson</strong>, M. Wu, J.D. Palmer, and D.R. Taylor. Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence within the angiosperm genus ''Silene''. Genome Biology and Evolution (in press).		# Sloan, D.B., <strong>A.J. Alverson</strong>, M. Wu, J.D. Palmer, and D.R. Taylor. Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence within the angiosperm genus ''Silene''. Genome Biology and Evolution (in press).
	# <strong>Alverson, A. J.</strong>, Rice, D. W., Dickinson, S., Barry, K., and Palmer, J. D. 2011. Origins and recombination of the bacterial-sized multichromosomal mitochondrial genome of cucumber (''Cucumis sativus''). The Plant Cell 23, 2499-2513. [http://dx.doi.org/10.1105/tpc.111.087189 doi: 10.1105/tpc.111.087189] [http://dx.doi.org/10.1105/tpc.111.230711 Featured article]		# <strong>Alverson, A. J.</strong>, Rice, D. W., Dickinson, S., Barry, K., and Palmer, J. D. 2011. Origins and recombination of the bacterial-sized multichromosomal mitochondrial genome of cucumber (''Cucumis sativus''). The Plant Cell 23, 2499-2513. [http://dx.doi.org/10.1105/tpc.111.087189 doi: 10.1105/tpc.111.087189] [http://dx.doi.org/10.1105/tpc.111.230711 Featured article]

Andrew J. Alverson at 15:13, 22 February 2012

Andrew J. Alverson — Wed, 22 Feb 2012 15:13:36 GMT

←Older revision		Revision as of 15:13, 22 February 2012
Line 3:		Line 3:

	==Angiosperm organelle genomes==		==Angiosperm organelle genomes==
-	# Sloan, D.B., <strong>A.J. Alverson</strong>, J.P. Chuckalovcak, M. Wu, D.E. McCauley, J.D. Palmer, and D.R. Taylor. Rapid evolution of enormous, multichromosomal genomes in flowering plants. PLoS Biology (~~in press~~).	+	# Sloan, D.B., <strong>A.J. Alverson</strong>, J.P. Chuckalovcak, M. Wu, D.E. McCauley, J.D. Palmer, and D.R. Taylor. Rapid evolution of enormous, multichromosomal genomes in flowering plants. PLoS Biology 10(1): e1001241 [doi:10.1371/journal.pbio.1001241] [F1000]
	# Sloan, D.B., <strong>A.J. Alverson</strong>, M. Wu, J.D. Palmer, and D.R. Taylor. Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence within the angiosperm genus ''Silene''. Genome Biology and Evolution (in press).		# Sloan, D.B., <strong>A.J. Alverson</strong>, M. Wu, J.D. Palmer, and D.R. Taylor. Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence within the angiosperm genus ''Silene''. Genome Biology and Evolution (in press).
	# <strong>Alverson, A. J.</strong>, Rice, D. W., Dickinson, S., Barry, K., and Palmer, J. D. 2011. Origins and recombination of the bacterial-sized multichromosomal mitochondrial genome of cucumber (''Cucumis sativus''). The Plant Cell 23, 2499-2513. [http://dx.doi.org/10.1105/tpc.111.087189 doi: 10.1105/tpc.111.087189] [http://dx.doi.org/10.1105/tpc.111.230711 Featured article]		# <strong>Alverson, A. J.</strong>, Rice, D. W., Dickinson, S., Barry, K., and Palmer, J. D. 2011. Origins and recombination of the bacterial-sized multichromosomal mitochondrial genome of cucumber (''Cucumis sativus''). The Plant Cell 23, 2499-2513. [http://dx.doi.org/10.1105/tpc.111.087189 doi: 10.1105/tpc.111.087189] [http://dx.doi.org/10.1105/tpc.111.230711 Featured article]

Andrew J. Alverson at 15:28, 26 November 2011

Andrew J. Alverson — Sat, 26 Nov 2011 15:28:02 GMT

Andrew J. Alverson at 15:26, 26 November 2011

Andrew J. Alverson — Sat, 26 Nov 2011 15:26:06 GMT

←Older revision		Revision as of 15:26, 26 November 2011
Line 3:		Line 3:

	==Angiosperm organelle genomes==		==Angiosperm organelle genomes==
-	# Sloan, D.B., A.J. Alverson, J.P. Chuckalovcak, M. Wu, D.E. McCauley, J.D. Palmer, and D.R. Taylor. Rapid evolution of enormous, multichromosomal genomes in flowering plants. PLoS Biology (in press).	+	# Sloan, D.B., <strong>A.J. Alverson</strong>, J.P. Chuckalovcak, M. Wu, D.E. McCauley, J.D. Palmer, and D.R. Taylor. Rapid evolution of enormous, multichromosomal genomes in flowering plants. PLoS Biology (in press).
-	# Sloan, D.B., A.J. Alverson, M. Wu, J.D. Palmer, and D.R. Taylor. Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence within the angiosperm genus ''Silene''. Genome Biology and Evolution (in press).	+	# Sloan, D.B., <strong>A.J. Alverson</strong>, M. Wu, J.D. Palmer, and D.R. Taylor. Recent acceleration of plastid sequence and structural evolution coincides with extreme mitochondrial divergence within the angiosperm genus ''Silene''. Genome Biology and Evolution (in press).
-	# Alverson, A. J., Rice, D. W., Dickinson, S., Barry, K., and Palmer, J. D. 2011. Origins and recombination of the bacterial-sized multichromosomal mitochondrial genome of cucumber (''Cucumis sativus''). The Plant Cell 23, 2499-2513. [http://dx.doi.org/10.1105/tpc.111.087189 doi: 10.1105/tpc.111.087189] [http://dx.doi.org/10.1105/tpc.111.230711 Featured article]	+	# <strong>Alverson, A. J.</strong>, Rice, D. W., Dickinson, S., Barry, K., and Palmer, J. D. 2011. Origins and recombination of the bacterial-sized multichromosomal mitochondrial genome of cucumber (''Cucumis sativus''). The Plant Cell 23, 2499-2513. [http://dx.doi.org/10.1105/tpc.111.087189 doi: 10.1105/tpc.111.087189] [http://dx.doi.org/10.1105/tpc.111.230711 Featured article]
-	# Alverson, A. J., Zhuo, S., Rice, D. W., Sloan, D. B., and Palmer, J. D. 2011. The mitochondrial genome of the legume ''Vigna radiata'' and the analysis of recombination across short mitochondrial repeats. PLoS ONE 6, e16404. [http://dx.doi.org/10.1371/journal.pone.0016404 doi: 10.1371/journal.pone.0016404]	+	# <strong>Alverson, A. J.</strong>, Zhuo, S., Rice, D. W., Sloan, D. B., and Palmer, J. D. 2011. The mitochondrial genome of the legume ''Vigna radiata'' and the analysis of recombination across short mitochondrial repeats. PLoS ONE 6, e16404. [http://dx.doi.org/10.1371/journal.pone.0016404 doi: 10.1371/journal.pone.0016404]
-	# Alverson, A. J., Wei, X. X., Rice, D. W., Stern, D. B., Barry, K., and Palmer, J. D. 2010. Insights into the evolution of mitochondrial genome size from complete sequences of ''Citrullus lanatus'' and ''Cucurbita pepo'' (Cucurbitaceae). Mol Biol Evol 27, 1436-1448. [http://dx.doi.org/10.1093/molbev/msq029 doi: 10.1093/molbev/msq029]	+	# <strong>Alverson, A. J.</strong>, Wei, X. X., Rice, D. W., Stern, D. B., Barry, K., and Palmer, J. D. 2010. Insights into the evolution of mitochondrial genome size from complete sequences of ''Citrullus lanatus'' and ''Cucurbita pepo'' (Cucurbitaceae). Mol Biol Evol 27, 1436-1448. [http://dx.doi.org/10.1093/molbev/msq029 doi: 10.1093/molbev/msq029]
-	# Sloan, D. B., MacQueen, A. H., Alverson, A. J., Palmer, J. D., and Taylor, D. R. 2010. Extensive loss of RNA editing sites in rapidly evolving ''Silene'' mitochondrial genomes: selection vs. retroprocessing as the driving force. Genetics 185, 1369-1380. [http://dx.doi.org/10.1534/genetics.110.118000 doi: 10.1534/genetics.110.118000]	+	# Sloan, D. B., MacQueen, A. H., <strong>Alverson, A. J.</strong>, Palmer, J. D., and Taylor, D. R. 2010. Extensive loss of RNA editing sites in rapidly evolving ''Silene'' mitochondrial genomes: selection vs. retroprocessing as the driving force. Genetics 185, 1369-1380. [http://dx.doi.org/10.1534/genetics.110.118000 doi: 10.1534/genetics.110.118000]
-	# Sloan, D. B., Alverson, A. J., Storchova, H., Palmer, J. D., and Taylor, D. R. 2010. Extensive loss of translational genes in the structurally dynamic mitochondrial genome of the angiosperm ''Silene latifolia''. BMC Evol Biol 10, 274. [http://dx.doi.org/10.1186/1471-2148-10-274 doi: 10.1186/1471-2148-10-274]	+	# Sloan, D. B., <strong>Alverson, A. J.</strong>, Storchova, H., Palmer, J. D., and Taylor, D. R. 2010. Extensive loss of translational genes in the structurally dynamic mitochondrial genome of the angiosperm ''Silene latifolia''. BMC Evol Biol 10, 274. [http://dx.doi.org/10.1186/1471-2148-10-274 doi: 10.1186/1471-2148-10-274]
-	# Sanchez-Puerta, M. V., Cho, Y., Mower, J. P., Alverson, A. J., and Palmer, J. D. 2008. Frequent, phylogenetically local horizontal transfer of the cox1 group I intron in flowering plant mitochondria. Mol Biol Evol 25, 1762-1777. [http://dx.doi.org/10.1093/molbev/msn129 doi: 10.1093/molbev/msn129]	+	# Sanchez-Puerta, M. V., Cho, Y., Mower, J. P., <strong>Alverson, A. J.</strong>, and Palmer, J. D. 2008. Frequent, phylogenetically local horizontal transfer of the cox1 group I intron in flowering plant mitochondria. Mol Biol Evol 25, 1762-1777. [http://dx.doi.org/10.1093/molbev/msn129 doi: 10.1093/molbev/msn129]
-	# Jansen, R. K., Kaittanis, C., Saski, C., Lee, S. B., Tomkins, J., Alverson, A. J., and Daniell, H. 2006. Phylogenetic analyses of ''Vitis'' (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids. BMC Evol Biol 6. [http://dx.doi.org/10.1186/1471-2148-6-32 doi: 10.1186/1471-2148-6-32]	+	# Jansen, R. K., Kaittanis, C., Saski, C., Lee, S. B., Tomkins, J., <strong>Alverson, A. J.</strong>, and Daniell, H. 2006. Phylogenetic analyses of ''Vitis'' (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids. BMC Evol Biol 6. [http://dx.doi.org/10.1186/1471-2148-6-32 doi: 10.1186/1471-2148-6-32]
-	# Jansen, R. K., Raubeson, L. A., Boore, J. L., DePamphilis, C. W., Chumley, T. W., Haberle, R. C., Wyman, S. K., Alverson, A. J., Peery, R., Herman, S. J., Fourcade, H. M., Kuehl, J. V., McNeal, J. R., Leebens-Mack, J., and Cui, L. 2005. Methods for obtaining and analyzing whole chloroplast genome sequences. In Molecular Evolution: Producing the Biochemical Data, Part B, pp. 348-384. [http://dx.doi.org/10.1016/S0076-6879(05)95020-9 doi: 10.1016/S0076-6879(05)95020-9]	+	# Jansen, R. K., Raubeson, L. A., Boore, J. L., DePamphilis, C. W., Chumley, T. W., Haberle, R. C., Wyman, S. K., <strong>Alverson, A. J.</strong>, Peery, R., Herman, S. J., Fourcade, H. M., Kuehl, J. V., McNeal, J. R., Leebens-Mack, J., and Cui, L. 2005. Methods for obtaining and analyzing whole chloroplast genome sequences. In Molecular Evolution: Producing the Biochemical Data, Part B, pp. 348-384. [http://dx.doi.org/10.1016/S0076-6879(05)95020-9 doi: 10.1016/S0076-6879(05)95020-9]

←Older revision		Revision as of 15:28, 26 November 2011
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	==Diatoms==		==Diatoms==
-	# Alverson, A. J., Beszteri, B., Julius, M. L., and Theriot, E. C. 2011. The model marine diatom ''Thalassiosira pseudonana'' likely descended from a freshwater ancestor in the genus ''Cyclotella''. BMC Evol Biol 11, 125. [http://dx.doi.org/10.1186/1471-2148-11-125 doi: 10.1186/1471-2148-11-125]	+	# <strong>Alverson, A. J.</strong>, Beszteri, B., Julius, M. L., and Theriot, E. C. 2011. The model marine diatom ''Thalassiosira pseudonana'' likely descended from a freshwater ancestor in the genus ''Cyclotella''. BMC Evol Biol 11, 125. [http://dx.doi.org/10.1186/1471-2148-11-125 doi: 10.1186/1471-2148-11-125]
-	# Theriot, E. C., Cannone, J. J., Gutell, R. R., and Alverson, A. J. 2009. The limits of nuclear-encoded SSU rDNA for resolving the diatom phylogeny. Eur J Phycol 44, 277-290. [http://dx.doi.org/10.1080/09670260902749159 doi: 10.1080/09670260902749159]	+	# Theriot, E. C., Cannone, J. J., Gutell, R. R., and <strong>Alverson, A. J.</strong> 2009. The limits of nuclear-encoded SSU rDNA for resolving the diatom phylogeny. Eur J Phycol 44, 277-290. [http://dx.doi.org/10.1080/09670260902749159 doi: 10.1080/09670260902749159]
-	# Alverson, A. J., Jansen, R. K., and Theriot, E. C. 2009. Response to Medlin and Kaczmarska (2008). Mol Phylogenet Evol 50, 409-410. [http://dx.doi.org/10.1016/j.ympev.2008.11.006 doi: 10.1016/j.ympev.2008.11.006]	+	# <strong>Alverson, A. J.</strong>, Jansen, R. K., and Theriot, E. C. 2009. Response to Medlin and Kaczmarska (2008). Mol Phylogenet Evol 50, 409-410. [http://dx.doi.org/10.1016/j.ympev.2008.11.006 doi: 10.1016/j.ympev.2008.11.006]
-	# Alverson, A. J. 2008. Molecular systematics and the diatom species. Protist 159, 339-353. [http://dx.doi.org/10.1016/j.protis.2008.04.001 doi: 10.1016/j.protis.2008.04.001]	+	# <strong>Alverson, A. J.</strong> 2008. Molecular systematics and the diatom species. Protist 159, 339-353. [http://dx.doi.org/10.1016/j.protis.2008.04.001 doi: 10.1016/j.protis.2008.04.001]
-	# Alverson, A. J. 2007. Strong purifying selection in the silicon transporters of marine and freshwater diatoms. Limnol Oceanogr 52, 1420-1429. [http://dx.doi.org/10.4319/lo.2007.52.4.1420 doi: 10.4319/lo.2007.52.4.1420]	+	# <strong>Alverson, A. J.</strong> 2007. Strong purifying selection in the silicon transporters of marine and freshwater diatoms. Limnol Oceanogr 52, 1420-1429. [http://dx.doi.org/10.4319/lo.2007.52.4.1420 doi: 10.4319/lo.2007.52.4.1420]
-	# Alverson, A. J., Jansen, R. K., and Theriot, E. C. 2007. Bridging the Rubicon: Phylogenetic analysis reveals repeated colonizations of marine and fresh waters by thalassiosiroid diatoms. Mol Phylogenet Evol 45, 193-210. [http://dx.doi.org/10.1016/j.ympev.2007.03.024 doi: 10.1016/j.ympev.2007.03.024]	+	# <strong>Alverson, A. J.</strong>, Jansen, R. K., and Theriot, E. C. 2007. Bridging the Rubicon: Phylogenetic analysis reveals repeated colonizations of marine and fresh waters by thalassiosiroid diatoms. Mol Phylogenet Evol 45, 193-210. [http://dx.doi.org/10.1016/j.ympev.2007.03.024 doi: 10.1016/j.ympev.2007.03.024]
-	# Alverson, A. J., Cannone, J. J., Gutell, R. R., and Theriot, E. C. 2006. The evolution of elongate shape in diatoms. J Phycol 42, 655-668. [http://dx.doi.org/10.1111/j.1529-8817.2006.00228.x doi: 10.1111/j.1529-8817.2006.00228.x]	+	# <strong>Alverson, A. J.</strong>, Cannone, J. J., Gutell, R. R., and Theriot, E. C. 2006. The evolution of elongate shape in diatoms. J Phycol 42, 655-668. [http://dx.doi.org/10.1111/j.1529-8817.2006.00228.x doi: 10.1111/j.1529-8817.2006.00228.x]
-	# Alverson, A. J., Kang, S.-H., and Theriot, E. C. 2006. Cell wall morphology and systematic importance of ''Thalassiosira ritscheri'' (Hustedt) Hasle, with a description of ''Shionodiscus'' gen. nov. Diatom Res 21, 251-262. [http://dx.doi.org/10.1080/0269249X.2006.9705667 doi: 10.1080/0269249X.2006.9705667]	+	# <strong>Alverson, A. J.</strong>, Kang, S.-H., and Theriot, E. C. 2006. Cell wall morphology and systematic importance of ''Thalassiosira ritscheri'' (Hustedt) Hasle, with a description of ''Shionodiscus'' gen. nov. Diatom Res 21, 251-262. [http://dx.doi.org/10.1080/0269249X.2006.9705667 doi: 10.1080/0269249X.2006.9705667]
-	# Thamatrakoln, K., Alverson, A. J., and Hildebrand, M. 2006. Comparative sequence analysis of diatom silicon transporters: Toward a mechanistic model of silicon transport. J Phycol 42, 822-834. [http://dx.doi.org/10.1111/j.1529-8817.2006.00233.x doi: 10.1111/j.1529-8817.2006.00233.x]	+	# Thamatrakoln, K., <strong>Alverson, A. J.</strong>, and Hildebrand, M. 2006. Comparative sequence analysis of diatom silicon transporters: Toward a mechanistic model of silicon transport. J Phycol 42, 822-834. [http://dx.doi.org/10.1111/j.1529-8817.2006.00233.x doi: 10.1111/j.1529-8817.2006.00233.x]
-	# Alverson, A. J., and Kolnick, L. 2005. Intragenomic nucleotide polymorphism among small subunit (18S) rDNA paralogs in the diatom genus ''Skeletonema'' (Bacillariophyta). J Phycol 41, 1248-1257. [http://dx.doi.org/10.1111/j.1529-8817.2005.00136.x doi: 10.1111/j.1529-8817.2005.00136.x]	+	# <strong>Alverson, A. J.</strong>, and Kolnick, L. 2005. Intragenomic nucleotide polymorphism among small subunit (18S) rDNA paralogs in the diatom genus ''Skeletonema'' (Bacillariophyta). J Phycol 41, 1248-1257. [http://dx.doi.org/10.1111/j.1529-8817.2005.00136.x doi: 10.1111/j.1529-8817.2005.00136.x]
-	# Alverson, A. J., and Theriot, E. C. 2005. Comments on recent progress toward reconstructing the diatom phylogeny. J Nanosci Nanotechno 5, 57-62. [http://dx.doi.org/10.1166/jnn.2005.007 doi: 10.1166/jnn.2005.007]	+	# <strong>Alverson, A. J.</strong>, and Theriot, E. C. 2005. Comments on recent progress toward reconstructing the diatom phylogeny. J Nanosci Nanotechno 5, 57-62. [http://dx.doi.org/10.1166/jnn.2005.007 doi: 10.1166/jnn.2005.007]
-	# Alverson, A. J., Manoylov, K. M., and Stevenson, R. J. 2003. Laboratory sources of error for algal community attributes during sample preparation and counting. J Appl Phycol 15. [http://dx.doi.org/10.1023/A:1026009724797 doi: 10.1023/A:1026009724797]	+	# <strong>Alverson, A. J.</strong>, Manoylov, K. M., and Stevenson, R. J. 2003. Laboratory sources of error for algal community attributes during sample preparation and counting. J Appl Phycol 15. [http://dx.doi.org/10.1023/A:1026009724797 doi: 10.1023/A:1026009724797]
-	# Alverson, A. J., and Courtney, G. W. 2002. Temporal patterns of diatom ingestion by larval net-winged midges (Diptera : Blephariceridae : Blepharicera). Freshw Biol 47, 2087-2097. [http://dx.doi.org/10.1046/j.1365-2427.2002.00951.x doi: 10.1046/j.1365-2427.2002.00951.x]	+	# <strong>Alverson, A. J.</strong>, and Courtney, G. W. 2002. Temporal patterns of diatom ingestion by larval net-winged midges (Diptera : Blephariceridae : Blepharicera). Freshw Biol 47, 2087-2097. [http://dx.doi.org/10.1046/j.1365-2427.2002.00951.x doi: 10.1046/j.1365-2427.2002.00951.x]
-	# Alverson, A. J., and Courtney, G. W. 2001. Niche overlap of sympatric Blepharicera larvae (Diptera : Blephariceridae) from the southern Appalachian Mountains. J North Am Benthol Soc 20, 564-581.	+	# <strong>Alverson, A. J.</strong>, and Courtney, G. W. 2001. Niche overlap of sympatric Blepharicera larvae (Diptera : Blephariceridae) from the southern Appalachian Mountains. J North Am Benthol Soc 20, 564-581.