ApE - A Plasmid Editor (software review)
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== Features == | == Features == | ||
| + | |||
| + | === OS, data format == | ||
| + | * runs on Windows, OS X, and Linux/Unix | ||
| + | * imports DNA Strider, Fasta, Genbank, EMBL and ABI sequence traces | ||
| + | * saves data in a modified Genbank file format (DNA Strider-compatible) | ||
| + | * exports BankIt feature table for sequence submission to NCBI GenBank | ||
| + | * export graphic files of sequence diagrams | ||
| + | |||
| + | === Sequence markup and tools == | ||
| + | * pre-existing expandable feature tables which can be used for automatic annotation | ||
| + | * sequence search, e.g. for primers, probes, or restriction sites | ||
| + | * restriction sites and region markup in sequence and in a simple cartoon | ||
| + | * shows translation, Tm, %GC, ORF of selected DNA | ||
| + | * BLAST selected sequence at NCBI or wormbase | ||
| + | * virtual digest including gel diagram | ||
== Links to the ApE homepage == | == Links to the ApE homepage == | ||
Revision as of 05:25, 30 June 2010
ApE, created and maintained by Wayne Davis from the University of Utah, is an free, basic sequence editor.
Contents |
Features
= OS, data format
- runs on Windows, OS X, and Linux/Unix
- imports DNA Strider, Fasta, Genbank, EMBL and ABI sequence traces
- saves data in a modified Genbank file format (DNA Strider-compatible)
- exports BankIt feature table for sequence submission to NCBI GenBank
- export graphic files of sequence diagrams
= Sequence markup and tools
- pre-existing expandable feature tables which can be used for automatic annotation
- sequence search, e.g. for primers, probes, or restriction sites
- restriction sites and region markup in sequence and in a simple cartoon
- shows translation, Tm, %GC, ORF of selected DNA
- BLAST selected sequence at NCBI or wormbase
- virtual digest including gel diagram
Links to the ApE homepage
- ApE plasmid editor homepage & downloads
- ApE wiki for question, answers, feature requests, bug reports, etc.
- download latest preview versions (alphas)
