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*TMHMM2 showed one transmembrane protein and two secreted/cell wall. | *TMHMM2 showed one transmembrane protein and two secreted/cell wall. | ||
*Module showed good correspondence w/ operon structure --> 7 hypothetical genes may be co-regulated with the ESAT-6 system. | *Module showed good correspondence w/ operon structure --> 7 hypothetical genes may be co-regulated with the ESAT-6 system. | ||
*Two RanaDown modules had high-affinity metal ion transport --> crucial for establishment of infection. | *Two RanaDown modules (4/5 RanaDown; 4/9 RanaDown) had high-affinity metal ion transport --> crucial for establishment of infection. | ||
**4/5 RanaDown genes included SAR0787-SAR0790 --> displaying the sst iron-uptake. 5 gene was binding protein for iron complex transport. | |||
*12 genes associated with virulence function found in another module (4/16 nodes RanaDown). | |||
**12 implicated Colonization and immuno-modulation. | |||
**Remaining 4 genes: SAR1489, SAR2421, SAR1223, and SAR1802. | |||
**All 16 genes encode transmembrane/secreted proteins that are anchored on the cell wall. | |||
*'Pathogenesis' was significant for this module. | |||
Latest revision as of 16:45, 9 November 2011
Abstract
- Background
- Staphylococcus aureus - human pathogen. Treatments are needed. Antimicrobial peptides potential antibiotic to MRSA.
- Such as Renalexin - fights against gram positive bacteria, S. aureus in particular.
- Study of drug resistance and mode of action is important.
- Staphylococcus aureus - human pathogen. Treatments are needed. Antimicrobial peptides potential antibiotic to MRSA.
- Results
- Bayesian logistic regression - allows identification of renalexin response modules from MRSA-252 preteome and transcriptome profiling.
- Relaxin displayed killing mechanisms & cell wall activity.
- Gene disruption and osmotic fragility experiments supported cell wall effects.
- 22 Virulence factors inferred --> VraRS two-component system & PhoU-mediated persister formation --> MRSA tolerance to cationic antimicrobial peptides.
- Conclusions
- Integrative approach to study drug resistance and their mode of action. Finds lead to development of trategies against Staphylococcus aureus (MRSA in particular)
Background
- MRSA - major cause of mortality and mobility. Resistant strains to treatments continue to emerge. Global problem --> community-associated MRSA.
- Prevention and treatment is needed!
- Antimicrobial peptides (AMPs) - novel antibiotic --> could be developed to combat bacteria that is resistant (such as MRSA).
- Produces by all living creatures for defenses -- 880 have been described.
- Renalexin
- 20 a.a. peptide (cationic)
- Possesses single intramolecular dispulphide bond --> forming heptapeptide ring at carboxyl terminus.
- Displays strong activity against Staphylococcus aureus (Gram-positive bacteria).
- Offers potential against staphylococcal infections (including MRSA).
- Need to understand antimicrobial action mechanisms to develop strategies.
- Antimicrobial inhibitory action can by studied by transcriptome and proteome profiling.
- Generation of protein and mRNA in response to antimicrobial stress are shown in certain cell functions and provide stress type imposed.
- Modeled pathway relationships for 95% of S. aureus MRSA-252 genes by integrating proteome and transcriptome profiling of bacteria that was drug-exposed w/ high-confidence functional association network.
- Approach showed 22 virulence factors and killing mechs. for renalexin along with cell wall effects.
- Evidence of VraRS two-component system in cationic peptide resistance.
- Drug target candidate - FtsH. Role of PhoU-mediated persister formation in S. aureus drug tolerance.
Results and Discussion
Renalexin elicits significant changes in transcript and protein levels
- Sublethal ranalexin impaired but didn't abolish growth of MRSA-252 at concentration of 20μg/ml.
- Proteome and transcriptome profiling applied between control and renalexin exposed MRSA-252 cultures. Microarrays showed:
- 93 upregulated genes.
- 105 downregulated genes.
- No inconsistencies shown
- Gene Ontology (GO) --> only few cases of overlap and not uncommon. Identified 290 enriched terms --> highlighting effects of renalexin on MRSA.
Global gene functional association network
- Developed to give probabilistic model of global gene fn. and lay framework for renalexin response profiles.
- MRSA-252 genes were network nodes and cell signalling and metabolism were the connections (edges) between genes (nodes).
- 2494 nodes (genes) and 19076 edges (connections) were contained in final network. Network edges rate was 94.5% of MRSA-252 genes.
- Hierarchical structure w/ embedded modularity are denoted from node pair degree connectivity along with network degree clustering coefficient distributions.
- When compared to protein interaction networks, gene functional association is closer to metabolic networks.
- Seems reasonable because gene interactions are shared amongst all members of a functional group.
- Network was clustered into 597 putative functional modules --> transcriptome and proteome were mapped into these --> 11 modules had rich genes that showed altered expression in MRSA-252 cultures that were exposed to renalexin.
- Of theses 11 --> 5 upregulated and 6 downregulated.
- 58 nodes classified as intermodular hubs that are important regulators of system behavior.
Impact on virulence and inference of novel determinants
- Upon renalexin exposure(RanaDown), genes significantly downregulated that included all 6 MRSA-353 ESAT-6 secretion system components --> central to Staphylococcus aureus pathogenesis.
- Significant module included five ESAT-6 components; sixth gene (esaA, SAR0280) not assigned to module. 2 RanaDown genes (SAR0287, SAR0288) - uncharacterized hypothetical proteins.
- Six transmembrane regions predicted from SAR0280 gene --> 'membrane ABC permease' match found.
- Predicted that SAR0287 was cell wall anchored or secreted --> also matched conserved domains of protein families and virulence-associated families.
- Other five genes on module matched conserved domains of unknown fn.
- TMHMM2 showed one transmembrane protein and two secreted/cell wall.
- Module showed good correspondence w/ operon structure --> 7 hypothetical genes may be co-regulated with the ESAT-6 system.
- Two RanaDown modules (4/5 RanaDown; 4/9 RanaDown) had high-affinity metal ion transport --> crucial for establishment of infection.
- 4/5 RanaDown genes included SAR0787-SAR0790 --> displaying the sst iron-uptake. 5 gene was binding protein for iron complex transport.
- 12 genes associated with virulence function found in another module (4/16 nodes RanaDown).
- 12 implicated Colonization and immuno-modulation.
- Remaining 4 genes: SAR1489, SAR2421, SAR1223, and SAR1802.
- All 16 genes encode transmembrane/secreted proteins that are anchored on the cell wall.
- 'Pathogenesis' was significant for this module.
Links
- Alex A. Cardenas
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