Artificial transcriptional terminators

References

1. d'Aubenton Carafa Y, Brody E, and Thermes C. Prediction of rho-independent Escherichia coli transcription terminators. A statistical analysis of their RNA stem-loop structures. J Mol Biol. 1990 Dec 20;216(4):835-58. DOI:10.1016/s0022-2836(99)80005-9 |
2. Brendel V, Hamm GH, and Trifonov EN. Terminators of transcription with RNA polymerase from Escherichia coli: what they look like and how to find them. J Biomol Struct Dyn. 1986 Feb;3(4):705-23. DOI:10.1080/07391102.1986.10508457 |
3. Cheng SW, Lynch EC, Leason KR, Court DL, Shapiro BA, and Friedman DI. Functional importance of sequence in the stem-loop of a transcription terminator. Science. 1991 Nov 22;254(5035):1205-7. DOI:10.1126/science.1835546 |
4. Christie GE, Farnham PJ, and Platt T. Synthetic sites for transcription termination and a functional comparison with tryptophan operon termination sites in vitro. Proc Natl Acad Sci U S A. 1981 Jul;78(7):4180-4. DOI:10.1073/pnas.78.7.4180 |
5. Ermolaeva MD, Khalak HG, White O, Smith HO, and Salzberg SL. Prediction of transcription terminators in bacterial genomes. J Mol Biol. 2000 Aug 4;301(1):27-33. DOI:10.1006/jmbi.2000.3836 |
6. Lesnik EA, Sampath R, Levene HB, Henderson TJ, McNeil JA, and Ecker DJ. Prediction of rho-independent transcriptional terminators in Escherichia coli. Nucleic Acids Res. 2001 Sep 1;29(17):3583-94. DOI:10.1093/nar/29.17.3583 |
7. Lynn SP, Kasper LM, and Gardner JF. Contributions of RNA secondary structure and length of the thymidine tract to transcription termination at the thr operon attenuator. J Biol Chem. 1988 Jan 5;263(1):472-9.
8. Petrillo M, Silvestro G, Di Nocera PP, Boccia A, and Paolella G. Stem-loop structures in prokaryotic genomes. BMC Genomics. 2006 Jul 4;7:170. DOI:10.1186/1471-2164-7-170 |
9. Reynolds R, Bermúdez-Cruz RM, and Chamberlin MJ. Parameters affecting transcription termination by Escherichia coli RNA polymerase. I. Analysis of 13 rho-independent terminators. J Mol Biol. 1992 Mar 5;224(1):31-51. DOI:10.1016/0022-2836(92)90574-4 |
10. Reynolds R and Chamberlin MJ. Parameters affecting transcription termination by Escherichia coli RNA. II. Construction and analysis of hybrid terminators. J Mol Biol. 1992 Mar 5;224(1):53-63. DOI:10.1016/0022-2836(92)90575-5 |
11. Unniraman S, Prakash R, and Nagaraja V. Conserved economics of transcription termination in eubacteria. Nucleic Acids Res. 2002 Feb 1;30(3):675-84. DOI:10.1093/nar/30.3.675 |
12. Uptain SM and Chamberlin MJ. Escherichia coli RNA polymerase terminates transcription efficiently at rho-independent terminators on single-stranded DNA templates. Proc Natl Acad Sci U S A. 1997 Dec 9;94(25):13548-53. DOI:10.1073/pnas.94.25.13548 |
13. von Hippel PH and Yager TD. The elongation-termination decision in transcription. Science. 1992 Feb 14;255(5046):809-12. DOI:10.1126/science.1536005 |
14. Wilson KS and von Hippel PH. Stability of Escherichia coli transcription complexes near an intrinsic terminator. J Mol Biol. 1994 Nov 18;244(1):36-51. DOI:10.1006/jmbi.1994.1702 |
15. Wilson KS and von Hippel PH. Transcription termination at intrinsic terminators: the role of the RNA hairpin. Proc Natl Acad Sci U S A. 1995 Sep 12;92(19):8793-7. DOI:10.1073/pnas.92.19.8793 |
16. Yager TD and von Hippel PH. A thermodynamic analysis of RNA transcript elongation and termination in Escherichia coli. Biochemistry. 1991 Jan 29;30(4):1097-118. DOI:10.1021/bi00218a032 |