BE.180:Syllabus

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!TA
!TA
!Concept
!Concept
-
!HW
+
!Assignment
|--
|--
| 1
| 1
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| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
| [[BE.180:Abstraction1 | Abstraction: From DNA to Parts]]
| [[BE.180:Abstraction1 | Abstraction: From DNA to Parts]]
 +
| Assignment 1 released
|--
|--
| 2
| 2
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| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
| [[BE.180:Devices1 | Device Modeling & Simplification]]
| [[BE.180:Devices1 | Device Modeling & Simplification]]
 +
| Assignment 1 due
|--
|--
|
|
-
! colspan="5" | President's Day holiday Feb 20, No class Tues Feb 21(Mon schedule)  
+
! colspan="6" | President's Day holiday Feb 20, No class Tues Feb 21(Mon schedule)  
|--
|--
| GL
| GL
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| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
| [[BE.180:DeviceAnalysis | Device Analysis]]
| [[BE.180:DeviceAnalysis | Device Analysis]]
 +
| Assignment 2 released
|--
|--
| 3
| 3
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| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
| [[BE.180:Decomposition1 | Decomposition of Complex Problems]] (3/10 is last day to add)
| [[BE.180:Decomposition1 | Decomposition of Complex Problems]] (3/10 is last day to add)
 +
| Assignment 2 due; 3 released
|--
|--
| 4
| 4
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| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
| [[BE.180:Decomposition2 | From Systems to DNA]]
| [[BE.180:Decomposition2 | From Systems to DNA]]
 +
| Assignment 3 due
|--
|--
| D
| D
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| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
| [[BE.180:DetectIdent | DNA Detection & Identification]]
| [[BE.180:DetectIdent | DNA Detection & Identification]]
 +
| Assignment 4 released
|--
|--
| 6
| 6
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| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
| [[BE.180:SpaceTime2 | Programming Space & Time Systems]]
| [[BE.180:SpaceTime2 | Programming Space & Time Systems]]
 +
| Assignment 4 due
|--
|--
! colspan="6" | Patriot's day holiday April 17-18
! colspan="6" | Patriot's day holiday April 17-18
|--
|--
-
| 0
+
| 7
-
| 18
+
| 1
| Thurs Apr 20
| Thurs Apr 20
| [[Drew Endy | DE]]
| [[Drew Endy | DE]]
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
| [[BE.180:Sequence | Sequence Analysis]]
| [[BE.180:Sequence | Sequence Analysis]]
 +
| Assignment 5 released
|--
|--
-
| 0
+
| 7
-
| 19
+
| 2
| Tues Apr 25
| Tues Apr 25
| [[Drew Endy | DE]]
| [[Drew Endy | DE]]
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| [[BE.180:Annotation | Sequence Annotation]]
| [[BE.180:Annotation | Sequence Annotation]]
|--
|--
-
| 0
+
| 7
-
| 20
+
| 3
| Thurs Apr 27
| Thurs Apr 27
| [[Drew Endy | DE]]
| [[Drew Endy | DE]]
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| [[BE.180:Expression | Expression Analysis]] (4/27 is last day to drop)
| [[BE.180:Expression | Expression Analysis]] (4/27 is last day to drop)
|--
|--
-
| 0
+
| 7
-
| 21
+
| 4
| Tues May 2
| Tues May 2
| [[Drew Endy | DE]]
| [[Drew Endy | DE]]
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| [[BE.180:Modeling | Model Inference]]
| [[BE.180:Modeling | Model Inference]]
|--
|--
-
| 0
+
| 7
-
| 22
+
| 5
| Thurs May 4
| Thurs May 4
| [[Drew Endy | DE]]
| [[Drew Endy | DE]]
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
| [[Sabrina_Spencer | SS]], [[Lauffenburger:Laura_Sontag | LS]]
| [[BE.180:Testing | Model Testing]]
| [[BE.180:Testing | Model Testing]]
 +
| Assignment 5 due
|--
|--
| D
| D

Revision as of 19:58, 5 February 2006

BE.180 Biological Engineering Programming

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Home        Syllabus        Assignments        Exams        Expectations       

Programming Tutorial        Biology Tutorial       


MODULE DAY DATE LECTURER TA Concept Assignment
1 1 Tues Feb 7 DE SS, LS Biological Engineering & Programming DNA
2 1 Thurs Feb 9 DE SS, LS Abstraction: From DNA to Parts Assignment 1 released
2 2 Tues Feb 14 DE SS, LS Abstraction: From Parts to Devices
3 1 Thurs Feb 16 DE SS, LS Device Modeling & Simplification Assignment 1 due
President's Day holiday Feb 20, No class Tues Feb 21(Mon schedule)
GL 1 Thurs Feb 23 DE SS, LS Tom Knight lecture
GL 2 Tues Feb 28 DE SS, LS Gerry Sussman lecture
3 2 Thurs Mar 2 DE SS, LS Device Analysis Assignment 2 released
3 3 Tues Mar 7 DE SS, LS Device Composition
4 1 Thurs Mar 9 DE SS, LS Decomposition of Complex Problems (3/10 is last day to add) Assignment 2 due; 3 released
4 2 Tues Mar 14 DE SS, LS Devices, Revisited
4 3 Thurs Mar 16 DE SS, LS From Systems to DNA Assignment 3 due
D 1 Tues Mar 21 DE SS, LS Discussion & Review
E 1 Thurs Mar 23 DE SS, LS Exam 1 (covers through 16 March lecture)
Spring Break Mar 27-31
5 1 Tues Apr 4 DE SS, LS Sequence Optimization
5 2 Thurs Apr 6 DE SS, LS DNA Detection & Identification Assignment 4 released
6 1 Tues Apr 11 DE SS, LS Space and Time Systems
6 2 Thurs Apr 13 DE SS, LS Programming Space & Time Systems Assignment 4 due
Patriot's day holiday April 17-18
7 1 Thurs Apr 20 DE SS, LS Sequence Analysis Assignment 5 released
7 2 Tues Apr 25 DE SS, LS Sequence Annotation
7 3 Thurs Apr 27 DE SS, LS Expression Analysis (4/27 is last day to drop)
7 4 Tues May 2 DE SS, LS Model Inference
7 5 Thurs May 4 DE SS, LS Model Testing Assignment 5 due
D 2 Tues May 9 DE SS, LS Discussion & Review
E 2 Thurs May 11 DE SS, LS Exam2 (comprehensive through 4 May lecture)
EOC 1 Tues May 16 DE SS, LS Course Evaluation & Wrap-Up
- - Thurs May 18 No class
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