BIOL368/F11:Week 3: Difference between revisions

From OpenWetWare
Jump to navigationJump to search
(started assignment page by copying in from week 2)
 
(Undo revision 817964 by Kam D. Dahlquist (Talk)edited wrong page)
 
(7 intermediate revisions by the same user not shown)
Line 17: Line 17:
** Don't forget to add the "BIOL368/F11" category to the end of your wiki page.
** Don't forget to add the "BIOL368/F11" category to the end of your wiki page.


<!--
=== Electronic Lab Notebook ===
=== Electronic Lab Notebook ===


Complete your electronic notebook for your assigned part of the [[BIOL368/F11:Molecular Genetics Explorer]] project on your individual journal page.  Your notebook entry should contain:
Complete your electronic notebook for this week's part of the [[BIOL368/F11:HIV Evolution]] project on your individual journal page.  Your notebook entry should contain:
* Your methods: what did you actually do?  Give a step by step account.
* Record your methods, results, and interpretations for the [[BIOL368/F11:HIV_Evolution#In-class_Activity | In-class Activity]] using the ''Exploring HIV Evolution'' handout on your individual journal page (an electronic copy of this handout is available on the [https://mylmuconnect.lmu.edu/webapps/login/ MyLMU Connect site]).
* Your results: the answers to the questions in the protocol, plus any other results you gathered
** Activity 1/Part 2 starting on page 139
* A scientific conclusion:  what was your main finding for today's project?
** Activity 1/Part 3
** Activity 2/Part 1
** Activity 2/Part 2 ending on page 145
** Answer the questions throughout the handout on your individual journal page, recording your methods and any files, data, and screenshots that you use to complete the exercise..
* Complete the [[BIOL368/F11:HIV_Evolution#Preparation_for_Week_4_Journal_Club | preparation for the Week 4 Journal Club]] on your individual journal page. In short, you need to:
** Prepare your list of 10 vocabulary words and definitions
** Outline the article.
** Prepare what you are going to say for your assigned figure/table during the presentation in class.


'''''Although you will have assigned partner(s), you will need to fill out your own individual journal page.'''''
'''''Although you will have assigned partner(s), you will need to fill out your own individual journal page with your own work.'''''
 
<!--Note: for future classes, add a conclusion to this assignment.-->


== Shared Journal Assignment ==
== Shared Journal Assignment ==


* Store your journal entry in the shared [[BIOL368/F11:Class Journal Week 2]] page.  If this page does not exist yet, go ahead and create it (congratulations on getting in first&nbsp;''':)'''&nbsp;)
* Store your journal entry in the shared [[BIOL368/F11:Class Journal Week 3]] page.  If this page does not exist yet, go ahead and create it (congratulations on getting in first&nbsp;''':)'''&nbsp;)
* Link to the shared journal entry from your user page.
* Link to the shared journal entry from your user page.
* Link the shared journal page to this assignment page.
* Link the shared journal page to this assignment page.
Line 39: Line 47:
Answer these questions on the shared page:
Answer these questions on the shared page:


# What was the purpose of this assignment?
# What is your comfort level when working with the online databases and tools during the in-class activity?  What would increase your comfort level?
# What did I learn from this assignment?
# What was the easiest aspect of reading/understanding the Markham et al. (1998) article?
# What did I not understand (yet) about this assignment?
# What was the most difficult aspect of reading/understanding the Markham et al. (1998) article?
-->

Latest revision as of 11:43, 9 September 2014

BIOL368: Bioinformatics Laboratory

Loyola Marymount University

Home       People        HIV Evolution       HIV Structure       DNA Microarrays       Lionshare       Help  

This journal entry is due on Wednesday, September 21 at midnight PDT (Tuesday night/Wednesday morning). NOTE that the server records the time as Eastern Daylight Time (EDT). Therefore, midnight will register as 03:00.


Individual Journal Assignment

  • Store this journal entry as "username Week 3" (i.e., this is the text to place between the square brackets when you link to this page).
  • Create the following set of links. (HINT: you can do all of this easily by adding them to your template and then using the template on your pages.)
    • Link to your journal entry from your user page.
    • Link back from your journal entry to your user page.
    • Link to this assignment from your journal entry.
    • Don't forget to add the "BIOL368/F11" category to the end of your wiki page.

Electronic Lab Notebook

Complete your electronic notebook for this week's part of the BIOL368/F11:HIV Evolution project on your individual journal page. Your notebook entry should contain:

  • Record your methods, results, and interpretations for the In-class Activity using the Exploring HIV Evolution handout on your individual journal page (an electronic copy of this handout is available on the MyLMU Connect site).
    • Activity 1/Part 2 starting on page 139
    • Activity 1/Part 3
    • Activity 2/Part 1
    • Activity 2/Part 2 ending on page 145
    • Answer the questions throughout the handout on your individual journal page, recording your methods and any files, data, and screenshots that you use to complete the exercise..
  • Complete the preparation for the Week 4 Journal Club on your individual journal page. In short, you need to:
    • Prepare your list of 10 vocabulary words and definitions
    • Outline the article.
    • Prepare what you are going to say for your assigned figure/table during the presentation in class.

Although you will have assigned partner(s), you will need to fill out your own individual journal page with your own work.


Shared Journal Assignment

  • Store your journal entry in the shared BIOL368/F11:Class Journal Week 3 page. If this page does not exist yet, go ahead and create it (congratulations on getting in first :) )
  • Link to the shared journal entry from your user page.
  • Link the shared journal page to this assignment page.
  • Sign your portion of the journal with the standard wiki signature shortcut (~~~~).
  • Add the "BIOL368/F11" category to the end of the wiki page (if someone has not already done so).

Reflection

Answer these questions on the shared page:

  1. What is your comfort level when working with the online databases and tools during the in-class activity? What would increase your comfort level?
  2. What was the easiest aspect of reading/understanding the Markham et al. (1998) article?
  3. What was the most difficult aspect of reading/understanding the Markham et al. (1998) article?