BIOL368/F11:Week 3

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'''''Although you will have assigned partner(s), you will need to fill out your own individual journal page with your own work.'''''
'''''Although you will have assigned partner(s), you will need to fill out your own individual journal page with your own work.'''''
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<!--Note: for future classes, add a conclusion to this assignment.-->
== Shared Journal Assignment ==
== Shared Journal Assignment ==

Revision as of 18:40, 28 September 2011

BIOL368: Bioinformatics Laboratory

Loyola Marymount University

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This journal entry is due on Wednesday, September 21 at midnight PDT (Tuesday night/Wednesday morning). NOTE that the server records the time as Eastern Daylight Time (EDT). Therefore, midnight will register as 03:00.


Contents

Individual Journal Assignment

  • Store this journal entry as "username Week 3" (i.e., this is the text to place between the square brackets when you link to this page).
  • Create the following set of links. (HINT: you can do all of this easily by adding them to your template and then using the template on your pages.)
    • Link to your journal entry from your user page.
    • Link back from your journal entry to your user page.
    • Link to this assignment from your journal entry.
    • Don't forget to add the "BIOL368/F11" category to the end of your wiki page.

Electronic Lab Notebook

Complete your electronic notebook for this week's part of the BIOL368/F11:HIV Evolution project on your individual journal page. Your notebook entry should contain:

  • Record your methods, results, and interpretations for the In-class Activity using the Exploring HIV Evolution handout on your individual journal page (an electronic copy of this handout is available on the MyLMU Connect site).
    • Activity 1/Part 2 starting on page 139
    • Activity 1/Part 3
    • Activity 2/Part 1
    • Activity 2/Part 2 ending on page 145
    • Answer the questions throughout the handout on your individual journal page, recording your methods and any files, data, and screenshots that you use to complete the exercise..
  • Complete the preparation for the Week 4 Journal Club on your individual journal page. In short, you need to:
    • Prepare your list of 10 vocabulary words and definitions
    • Outline the article.
    • Prepare what you are going to say for your assigned figure/table during the presentation in class.

Although you will have assigned partner(s), you will need to fill out your own individual journal page with your own work.


Shared Journal Assignment

  • Store your journal entry in the shared BIOL368/F11:Class Journal Week 3 page. If this page does not exist yet, go ahead and create it (congratulations on getting in first :) )
  • Link to the shared journal entry from your user page.
  • Link the shared journal page to this assignment page.
  • Sign your portion of the journal with the standard wiki signature shortcut (~~~~).
  • Add the "BIOL368/F11" category to the end of the wiki page (if someone has not already done so).

Reflection

Answer these questions on the shared page:

  1. What is your comfort level when working with the online databases and tools during the in-class activity? What would increase your comfort level?
  2. What was the easiest aspect of reading/understanding the Markham et al. (1998) article?
  3. What was the most difficult aspect of reading/understanding the Markham et al. (1998) article?
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