BIOL398-01/S10:Class Journal Week 12 - Revision history

Janelle N. Ruiz: /* Janelle N. Ruiz */

Janelle N. Ruiz — Tue, 20 Apr 2010 15:48:00 GMT

Janelle N. Ruiz

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	#This week we were able to reformat variables in our data file and we learned the best way to format them to run in GenMAPP. We also learned that sometimes data is not always self-explanotory (we could not figure out how the authors calculated key variables in our excel file.		#This week we were able to reformat variables in our data file and we learned the best way to format them to run in GenMAPP. We also learned that sometimes data is not always self-explanotory (we could not figure out how the authors calculated key variables in our excel file.
	#I had questions but KP answered them.		#I had questions but KP answered them.
		+
		+	[[Janelle N. Ruiz Assignment 12]]

	==[[User:Bobak Seddighzadeh\|Bobak Seddighzadeh]]==		==[[User:Bobak Seddighzadeh\|Bobak Seddighzadeh]]==

Janelle N. Ruiz: /* Janelle N. Ruiz */

Janelle N. Ruiz — Tue, 20 Apr 2010 15:47:39 GMT

Janelle N. Ruiz

←Older revision		Revision as of 15:47, 20 April 2010
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	==[[User:Janelle N. Ruiz\|Janelle N. Ruiz]]==		==[[User:Janelle N. Ruiz\|Janelle N. Ruiz]]==
		+	#The purpose of this assignment was to prepare our excel data file of our gene data to be run for analysis on GenMAPP.
		+	#This week we were able to reformat variables in our data file and we learned the best way to format them to run in GenMAPP. We also learned that sometimes data is not always self-explanotory (we could not figure out how the authors calculated key variables in our excel file.
		+	#I had questions but KP answered them.
		+
	==[[User:Bobak Seddighzadeh\|Bobak Seddighzadeh]]==		==[[User:Bobak Seddighzadeh\|Bobak Seddighzadeh]]==
	#What is the purpose of this assignment? The purpose of this assignment was to familiarize us with our dataset, and more importantly to conduct some t-tests and other calculations that will aid us in the design of our experiment.		#What is the purpose of this assignment? The purpose of this assignment was to familiarize us with our dataset, and more importantly to conduct some t-tests and other calculations that will aid us in the design of our experiment.

Ryan N. Willhite: /* Ryan Willhite */

Ryan N. Willhite — Mon, 19 Apr 2010 15:48:42 GMT

Ryan Willhite

←Older revision		Revision as of 15:48, 19 April 2010
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	[[User:Ryan N. Willhite\|Ryan N. Willhite]] 11:43, 19 April 2010 (EDT)		[[User:Ryan N. Willhite\|Ryan N. Willhite]] 11:43, 19 April 2010 (EDT)
		+
		+	*[[BIOL398-01/S10:Week 12\|Week 12 Assignment Page]]
		+
		+	*[[Ryan N. Willhite Week 12\|Week 12 Journal]]

	==[[User:Kristoffer T. Chin \| Kristoffer Chin]]==		==[[User:Kristoffer T. Chin \| Kristoffer Chin]]==

Ryan N. Willhite: /* Ryan Willhite */

Ryan N. Willhite — Mon, 19 Apr 2010 15:43:50 GMT

Ryan Willhite

←Older revision		Revision as of 15:43, 19 April 2010
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-	# What was the purpose of this assignment?	+	# What was the purpose of this assignment? The purpose of this assignment was to practice the analysis of DNA Microarray data in Xcel. It also gave us a chance to be proactive in inserting and organizing even more data that can be calculated using equations in excel to get average, standard deviation, etc.
-	# What did I learn from this assignment (head, hands, heart)?	+	# What did I learn from this assignment (head, hands, heart)? I learned how to input these equations to help organize as well as input more data to be analyzed. I also learned that simple changes in the equation can give false values which was a mistake pretty easy to make ; thank goodness for a partner.
-	# What did I not understand (yet) about this assignment?	+	# What did I not understand (yet) about this assignment? I still do not understand all of the reading of data and I do not understand why some values say "DIVO" and not able to derive some value, which caused some problems in averages, etc.
		+
		+	[[User:Ryan N. Willhite\|Ryan N. Willhite]] 11:43, 19 April 2010 (EDT)

	==[[User:Kristoffer T. Chin \| Kristoffer Chin]]==		==[[User:Kristoffer T. Chin \| Kristoffer Chin]]==

Ryan N. Willhite: /* Ryan Willhite */

Ryan N. Willhite — Mon, 19 Apr 2010 15:37:19 GMT

Ryan Willhite

←Older revision		Revision as of 15:37, 19 April 2010
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	==[[User: Ryan N. Willhite \| Ryan Willhite]]==		==[[User: Ryan N. Willhite \| Ryan Willhite]]==
		+
		+
		+	# What was the purpose of this assignment?
		+	# What did I learn from this assignment (head, hands, heart)?
		+	# What did I not understand (yet) about this assignment?
		+
	==[[User:Kristoffer T. Chin \| Kristoffer Chin]]==		==[[User:Kristoffer T. Chin \| Kristoffer Chin]]==
	#The purpose of this assignment was to help us understand the data that we are working with with the DNA Microarray. It helps organize the data and understand the meaning of the numbers that are given to us in the XLS files. WE are also able to understand what the researched are actually looking at and which are significants		#The purpose of this assignment was to help us understand the data that we are working with with the DNA Microarray. It helps organize the data and understand the meaning of the numbers that are given to us in the XLS files. WE are also able to understand what the researched are actually looking at and which are significants

Amanda N. Wavrin: /* Amanda Wavrin */ spelling correction

Amanda N. Wavrin — Mon, 19 Apr 2010 07:01:00 GMT

Amanda Wavrin: spelling correction

←Older revision		Revision as of 07:01, 19 April 2010
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	# The purpose of this assignment was to begin our work with our Merrel et al. ''Vibrio cholerae'' project. Completing this assignment allowed us to start working with our own DNA microarray data, the data that is specific to our paper on ''V. cholerae''. Our dataset is now in GenMAPP version so we will be able to use them in lab this week.		# The purpose of this assignment was to begin our work with our Merrel et al. ''Vibrio cholerae'' project. Completing this assignment allowed us to start working with our own DNA microarray data, the data that is specific to our paper on ''V. cholerae''. Our dataset is now in GenMAPP version so we will be able to use them in lab this week.
-	# While completing this assignment I got a much better ~~understand~~ of how to analyze DNA microarray data while using excel. ~~Having not~~ a lot of background using excel, it was difficult to complete this assignment at first. After a little it became much easier.	+	# While completing this assignment I got a much better understanding of how to analyze DNA microarray data while using excel. Not having a lot of background using excel, it was difficult to complete this assignment at first. After a little practice it became much easier.
	# While following the instructions for this weeks assignment, I ran into some problems using excel. My computed p values did not match up with the expected results, leading me to beleive that I made a mistake along the way. I also had a difficult time creating and filling the "tstat" columns.		# While following the instructions for this weeks assignment, I ran into some problems using excel. My computed p values did not match up with the expected results, leading me to beleive that I made a mistake along the way. I also had a difficult time creating and filling the "tstat" columns.

Amanda N. Wavrin: /* Amanda Wavrin */ corrected questions

Amanda N. Wavrin — Mon, 19 Apr 2010 06:58:33 GMT

Amanda Wavrin: corrected questions

←Older revision		Revision as of 06:58, 19 April 2010
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	*[[BIOL398-01/S10:Week 11\|Week 12 Assignment Page]]		*[[BIOL398-01/S10:Week 11\|Week 12 Assignment Page]]

-	1. The purpose of this assignment was to begin our work with our Merrel et al. ''Vibrio cholerae'' project. Completing this assignment allowed us to start working with our own DNA microarray data, the data that is specific to our paper on ''V. cholerae''. Our dataset is now in GenMAPP version so we will be able to use them in lab this week.	+	# The purpose of this assignment was to begin our work with our Merrel et al. ''Vibrio cholerae'' project. Completing this assignment allowed us to start working with our own DNA microarray data, the data that is specific to our paper on ''V. cholerae''. Our dataset is now in GenMAPP version so we will be able to use them in lab this week.
-	2. While completing this assignment I got a much better understand of how to analyze DNA microarray data while using excel. Having not a lot of background using excel, it was difficult to complete this assignment at first. After a little ~~work using excel,~~ it became much easier.	+	# While completing this assignment I got a much better understand of how to analyze DNA microarray data while using excel. Having not a lot of background using excel, it was difficult to complete this assignment at first. After a little it became much easier.
-	3. While following the instructions for this weeks assignment, I ran into some problems using excel. My computed p values did not match up with the expected results, leading me to beleive that I made a mistake ~~using excel~~ along the way. I also had a difficult time creating and filling the "tstat" columns~~. The equations were not working as I had expected them too~~.	+	# While following the instructions for this weeks assignment, I ran into some problems using excel. My computed p values did not match up with the expected results, leading me to beleive that I made a mistake along the way. I also had a difficult time creating and filling the "tstat" columns.

	[[User:Amanda N. Wavrin\|Amanda N. Wavrin]] 02:43, 19 April 2010 (EDT)		[[User:Amanda N. Wavrin\|Amanda N. Wavrin]] 02:43, 19 April 2010 (EDT)

Bobak Seddighzadeh: /* Bobak Seddighzadeh */

Bobak Seddighzadeh — Mon, 19 Apr 2010 06:50:52 GMT

Bobak Seddighzadeh

←Older revision		Revision as of 06:50, 19 April 2010
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	#What did you learn? Firstly, I learned how to use excel much better. I learned how to find averages and t-tests and the mechanical aspects of using excel.		#What did you learn? Firstly, I learned how to use excel much better. I learned how to find averages and t-tests and the mechanical aspects of using excel.
	#Do you have any questions still? Some of the sanity check steps were a little hard to follow. I was not sure what an avergae log FC test was.		#Do you have any questions still? Some of the sanity check steps were a little hard to follow. I was not sure what an avergae log FC test was.
		+
		+	{{BobakS}}

	==[[User: Amanda N. Wavrin\| Amanda Wavrin]]==		==[[User: Amanda N. Wavrin\| Amanda Wavrin]]==

Bobak Seddighzadeh: /* Bobak Seddighzadeh */

Bobak Seddighzadeh — Mon, 19 Apr 2010 06:50:38 GMT

Bobak Seddighzadeh

←Older revision		Revision as of 06:50, 19 April 2010
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	==[[User:Janelle N. Ruiz\|Janelle N. Ruiz]]==		==[[User:Janelle N. Ruiz\|Janelle N. Ruiz]]==
	==[[User:Bobak Seddighzadeh\|Bobak Seddighzadeh]]==		==[[User:Bobak Seddighzadeh\|Bobak Seddighzadeh]]==
		+	#What is the purpose of this assignment? The purpose of this assignment was to familiarize us with our dataset, and more importantly to conduct some t-tests and other calculations that will aid us in the design of our experiment.
		+	#What did you learn? Firstly, I learned how to use excel much better. I learned how to find averages and t-tests and the mechanical aspects of using excel.
		+	#Do you have any questions still? Some of the sanity check steps were a little hard to follow. I was not sure what an avergae log FC test was.
		+
	==[[User: Amanda N. Wavrin\| Amanda Wavrin]]==		==[[User: Amanda N. Wavrin\| Amanda Wavrin]]==
	*[[Amanda N. Wavrin Week 12]]		*[[Amanda N. Wavrin Week 12]]

Alex J. George at 06:47, 19 April 2010

Alex J. George — Mon, 19 Apr 2010 06:47:30 GMT

←Older revision		Revision as of 06:47, 19 April 2010
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	==[[User:Angela A. Garibaldi \| Angela Garibaldi]]==		==[[User:Angela A. Garibaldi \| Angela Garibaldi]]==
	==[[User: Alex J. George \| Alex George]]==		==[[User: Alex J. George \| Alex George]]==
		+	# This assignment's purpose was to further analyze the data that is associated with our paper by using the raw data and making our own calculations
		+	# I definitely learned some useful shortcuts on Excel through this assignment. Also, it gave us the chance to see the kind of work that goes on behind the scenes of a scientific paper. I felt like our study wasn't even that comprehensive, but the amount of data associated with it was staggering.
		+	# As for questions for this assignment, I am slowly understanding the calculations we are doing and the purpose behind them. However, I am still unsure of a proper experimental question to design our data analysis around.
		+	[[User:Alex J. George\|Alex J. George]] 02:47, 19 April 2010 (EDT)
	==[[User: J'aime C. Moehlman \| J'aime Moehlman]]==		==[[User: J'aime C. Moehlman \| J'aime Moehlman]]==
	#The purpose of this assignment was to change the raw data we were given into the genMAPP formatted version and the sclaed versions that we will be using this week. We analyzed the formatted data by using excel.		#The purpose of this assignment was to change the raw data we were given into the genMAPP formatted version and the sclaed versions that we will be using this week. We analyzed the formatted data by using excel.

←Older revision		Revision as of 15:48, 19 April 2010
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	[[User:Ryan N. Willhite\|Ryan N. Willhite]] 11:43, 19 April 2010 (EDT)		[[User:Ryan N. Willhite\|Ryan N. Willhite]] 11:43, 19 April 2010 (EDT)
		+
		+	*[[BIOL398-01/S10:Week 12\|Week 12 Assignment Page]]
		+
		+	*[[Ryan N. Willhite Week 12\|Week 12 Journal]]

	==[[User:Kristoffer T. Chin \| Kristoffer Chin]]==		==[[User:Kristoffer T. Chin \| Kristoffer Chin]]==