BIOL398-01/S10:DNA Microarrays

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BIOL398-01: Bioinformatics Laboratory

Loyola Marymount University

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Background

References

  1. Brown PO and Botstein D. Exploring the new world of the genome with DNA microarrays. Nat Genet. 1999 Jan;21(1 Suppl):33-7. DOI:10.1038/4462 | PubMed ID:9915498 | HubMed [Paper1]
  2. LaTulippe E, Satagopan J, Smith A, Scher H, Scardino P, Reuter V, and Gerald WL. Comprehensive gene expression analysis of prostate cancer reveals distinct transcriptional programs associated with metastatic disease. Cancer Res. 2002 Aug 1;62(15):4499-506. PubMed ID:12154061 | HubMed [Paper2]
  3. Merrell DS, Butler SM, Qadri F, Dolganov NA, Alam A, Cohen MB, Calderwood SB, Schoolnik GK, and Camilli A. Host-induced epidemic spread of the cholera bacterium. Nature. 2002 Jun 6;417(6889):642-5. DOI:10.1038/nature00778 | PubMed ID:12050664 | HubMed [Paper3]
  4. van de Mortel JE, Almar Villanueva L, Schat H, Kwekkeboom J, Coughlan S, Moerland PD, Ver Loren van Themaat E, Koornneef M, and Aarts MG. Large expression differences in genes for iron and zinc homeostasis, stress response, and lignin biosynthesis distinguish roots of Arabidopsis thaliana and the related metal hyperaccumulator Thlaspi caerulescens. Plant Physiol. 2006 Nov;142(3):1127-47. DOI:10.1104/pp.106.082073 | PubMed ID:16998091 | HubMed [Paper4]
  5. O'Neill AJ, Lindsay JA, Gould K, Hinds J, and Chopra I. Transcriptional signature following inhibition of early-stage cell wall biosynthesis in Staphylococcus aureus. Antimicrob Agents Chemother. 2009 Apr;53(4):1701-4. DOI:10.1128/AAC.01309-08 | PubMed ID:19164146 | HubMed [Paper5]
  6. Tai SL, Daran-Lapujade P, Walsh MC, Pronk JT, and Daran JM. Acclimation of Saccharomyces cerevisiae to low temperature: a chemostat-based transcriptome analysis. Mol Biol Cell. 2007 Dec;18(12):5100-12. DOI:10.1091/mbc.e07-02-0131 | PubMed ID:17928405 | HubMed [Paper6]
All Medline abstracts: PubMed | HubMed

Groups

  • Michael, Kris, Salomon: Arabidopsis thaliana, van de Mortel et al. (2006)
  • Janelle, KP: human prostate cancer, LaTulippe et al. (2002)
  • J'aime, Amanda: Vibrio cholerae, Merrell et al. (2002)
  • Alex, Bobak: Saccharomyces cerevisiae, Tai et al. (2007)
  • Angela, Ryan: Staphylococcus aureus, O'Neill et al. (2009)