BIOL398-01/S10:DNA Microarrays

Background

References

1. Brown PO and Botstein D. Exploring the new world of the genome with DNA microarrays. Nat Genet. 1999 Jan;21(1 Suppl):33-7. DOI:10.1038/4462 |

   Brown & Botstein (1999) link to full text

2. Salomonis N, Hanspers K, Zambon AC, Vranizan K, Lawlor SC, Dahlquist KD, Doniger SW, Stuart J, Conklin BR, and Pico AR. GenMAPP 2: new features and resources for pathway analysis. BMC Bioinformatics. 2007 Jun 24;8:217. DOI:10.1186/1471-2105-8-217 |

   Salomonis et al. (2007) link to full text

3. Dahlquist KD, Salomonis N, Vranizan K, Lawlor SC, and Conklin BR. GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways. Nat Genet. 2002 May;31(1):19-20. DOI:10.1038/ng0502-19 |

   Dahlquist et al. (2002) link to full text

4. Doniger SW, Salomonis N, Dahlquist KD, Vranizan K, Lawlor SC, and Conklin BR. MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data. Genome Biol. 2003;4(1):R7. DOI:10.1186/gb-2003-4-1-r7 |

   Doniger et al. (2003) link to full text

5. LaTulippe E, Satagopan J, Smith A, Scher H, Scardino P, Reuter V, and Gerald WL. Comprehensive gene expression analysis of prostate cancer reveals distinct transcriptional programs associated with metastatic disease. Cancer Res. 2002 Aug 1;62(15):4499-506.

   LaTulippe et al. (2002) link to full text

6. Merrell DS, Butler SM, Qadri F, Dolganov NA, Alam A, Cohen MB, Calderwood SB, Schoolnik GK, and Camilli A. Host-induced epidemic spread of the cholera bacterium. Nature. 2002 Jun 6;417(6889):642-5. DOI:10.1038/nature00778 |

   Merrell et al. (2002) link to full text

7. van de Mortel JE, Almar Villanueva L, Schat H, Kwekkeboom J, Coughlan S, Moerland PD, Ver Loren van Themaat E, Koornneef M, and Aarts MG. Large expression differences in genes for iron and zinc homeostasis, stress response, and lignin biosynthesis distinguish roots of Arabidopsis thaliana and the related metal hyperaccumulator Thlaspi caerulescens. Plant Physiol. 2006 Nov;142(3):1127-47. DOI:10.1104/pp.106.082073 |

   van de Mortel et al. (2006) link to full text

8. O'Neill AJ, Lindsay JA, Gould K, Hinds J, and Chopra I. Transcriptional signature following inhibition of early-stage cell wall biosynthesis in Staphylococcus aureus. Antimicrob Agents Chemother. 2009 Apr;53(4):1701-4. DOI:10.1128/AAC.01309-08 |

   O'Neill et al. (2009) link to full text

9. Tai SL, Daran-Lapujade P, Walsh MC, Pronk JT, and Daran JM. Acclimation of Saccharomyces cerevisiae to low temperature: a chemostat-based transcriptome analysis. Mol Biol Cell. 2007 Dec;18(12):5100-12. DOI:10.1091/mbc.e07-02-0131 |

   Tai et al. (2007) link to full text

Groups

• Michael, Kris, Salomon: Arabidopsis thaliana, van de Mortel et al. (2006)
• Janelle, KP: human prostate cancer, LaTulippe et al. (2002)
• J'aime, Amanda: Vibrio cholerae, Merrell et al. (2002)
• Alex, Bobak: Saccharomyces cerevisiae, Tai et al. (2007)
• Angela, Ryan: Staphylococcus aureus, O'Neill et al. (2009)

Week 11

Week 12

Week 13

Week 14