BIOL398-01/S10:Sample Microarray Analysis Vibrio cholerae: Revision history

24 October 2015

• curprev 19:0519:05, 24 October 2015‎ Anindita Varshneya talk contribs‎ 16,248 bytes −113‎ →‎Before we begin...: editted the link to the Merrell paper.

15 October 2015

• curprev 15:5515:55, 15 October 2015‎ Kam D. Dahlquist talk contribs‎ 16,361 bytes −7‎ →‎Calculate the Bonferroni p value Correction: fixed equations
• curprev 00:5600:56, 15 October 2015‎ Kam D. Dahlquist talk contribs‎ 16,368 bytes +10‎ →‎Sanity Check: Compare individual genes with known data: added emphasis to question
• curprev 00:5500:55, 15 October 2015‎ Kam D. Dahlquist talk contribs‎ 16,358 bytes +8‎ →‎Sanity Check: Number of genes significantly changed: added % to last question
• curprev 00:5400:54, 15 October 2015‎ Kam D. Dahlquist talk contribs‎ 16,350 bytes +24‎ →‎Sanity Check: Number of genes significantly changed: added % to all
• curprev 00:5300:53, 15 October 2015‎ Kam D. Dahlquist talk contribs‎ 16,326 bytes +1,182‎ →‎Sanity Check: Number of genes significantly changed: added bonferroni and b-h to sanity check
• curprev 00:4800:48, 15 October 2015‎ Kam D. Dahlquist talk contribs‎ 15,144 bytes −137‎ →‎Prepare file for GenMAPP: modified to deal with new Bonferroni and B-H calculations
• curprev 00:4600:46, 15 October 2015‎ Kam D. Dahlquist talk contribs‎ 15,281 bytes +135‎ →‎Perform statistical analysis on the ratios: delete rows with avg and stdev
• curprev 00:4500:45, 15 October 2015‎ Kam D. Dahlquist talk contribs‎ 15,146 bytes −115‎ →‎Prepare file for GenMAPP: will move deleting rows with avg and stdev to previous section
• curprev 00:4200:42, 15 October 2015‎ Kam D. Dahlquist talk contribs‎ 15,261 bytes +458‎ →‎Calculate the Benjamini & Hochberg p value Correction: B-H p value instrucitons
• curprev 00:3000:30, 15 October 2015‎ Kam D. Dahlquist talk contribs‎ 14,803 bytes +1,560‎ →‎Calculate the Bonferroni p value Correction: pasted in b-h p value instructions from Dahlquist lab
• curprev 00:2700:27, 15 October 2015‎ Kam D. Dahlquist talk contribs‎ 13,243 bytes +696‎ →‎Perform statistical analysis on the ratios: added section for bonferroni correction
• curprev 00:1800:18, 15 October 2015‎ Kam D. Dahlquist talk contribs‎ 12,547 bytes +14‎ →‎Normalize the log ratios for the set of slides in the experiment: added back number of genes
• curprev 00:1700:17, 15 October 2015‎ Kam D. Dahlquist talk contribs‎ 12,533 bytes +73‎ →‎Sanity Check: Number of genes significantly changed: link to xkcd cartoon
• curprev 00:1600:16, 15 October 2015‎ Kam D. Dahlquist talk contribs‎ 12,460 bytes +25‎ →‎Sanity Check: Number of genes significantly changed: fixed emphasis
• curprev 00:1500:15, 15 October 2015‎ Kam D. Dahlquist talk contribs‎ 12,435 bytes +60‎ →‎Sanity Check: Number of genes significantly changed: highlighted with emphasis questions to be answered
• curprev 00:1200:12, 15 October 2015‎ Kam D. Dahlquist talk contribs‎ 12,375 bytes +317‎ →‎Normalize the log ratios for the set of slides in the experiment: instructions for easy pasting in Excel
• curprev 00:0900:09, 15 October 2015‎ Kam D. Dahlquist talk contribs‎ 12,058 bytes +10‎ →‎Normalize the log ratios for the set of slides in the experiment: emphasis added to why is this important

17 October 2013

• curprev 10:5810:58, 17 October 2013‎ Kam D. Dahlquist talk contribs‎ 12,048 bytes +20‎ →‎Perform statistical analysis on the ratios: fixed instructions for pasting scaled and centered data into new sheet
• curprev 10:5710:57, 17 October 2013‎ Kam D. Dahlquist talk contribs‎ 12,028 bytes +188‎ →‎Normalize the log ratios for the set of slides in the experiment: adjusted instructions for scaling and centering

7 October 2013

• curprev 15:2615:26, 7 October 2013‎ Kam D. Dahlquist talk contribs‎ 11,840 bytes +109‎ →‎Before we begin...: fixed link to SMD at Princeton

27 September 2013

• curprev 16:1616:16, 27 September 2013‎ Kam D. Dahlquist talk contribs‎ m 11,731 bytes 0‎ →‎Sanity Check: Compare individual genes with known data: replaced ? with .
• curprev 16:1516:15, 27 September 2013‎ Kam D. Dahlquist talk contribs‎ 11,731 bytes +4‎ →‎Perform statistical analysis on the ratios: indented lines under equations
• curprev 16:1416:14, 27 September 2013‎ Kam D. Dahlquist talk contribs‎ 11,727 bytes +6‎ →‎Normalize the log ratios for the set of slides in the experiment: indented lines under equations

13 June 2012

• curprev 09:3009:30, 13 June 2012‎ Kam D. Dahlquist talk contribs‎ 11,721 bytes +5‎ →‎Normalize the log ratios for the set of slides in the experiment: adjusted dollar sign instructions

14 November 2010

• curprev 15:1015:10, 14 November 2010‎ Kam D. Dahlquist talk contribs‎ 11,716 bytes +62‎ →‎Sanity Check: Number of genes significantly changed: separated questions so that students would filter correctly
• curprev 14:5114:51, 14 November 2010‎ Kam D. Dahlquist talk contribs‎ m 11,654 bytes +1‎ →‎Perform statistical analysis on the ratios: fixed typo

22 October 2010

• curprev 23:2523:25, 22 October 2010‎ John David N. Dionisio talk contribs‎ 11,653 bytes −5‎ →‎Perform statistical analysis on the ratios: Clarified the instruction for the Tstat column.

19 October 2010

• curprev 18:3918:39, 19 October 2010‎ Zeb Russo talk contribs‎ 11,658 bytes −6‎ →‎Perform statistical analysis on the ratios: changed 'fold_change' to 'statistics'

12 October 2010

• curprev 10:2910:29, 12 October 2010‎ Kam D. Dahlquist talk contribs‎ 11,664 bytes +5‎ →‎Before we begin...: put in in sub tabs for log2

13 April 2010

• curprev 11:0511:05, 13 April 2010‎ J'aime C. Moehlman talk contribs‎ 11,659 bytes +2‎ changed steps from type to press

12 April 2010

• curprev 21:0821:08, 12 April 2010‎ Kam D. Dahlquist talk contribs‎ 11,657 bytes +116‎ link back to overview of DNA microarray analysis page
• curprev 21:0521:05, 12 April 2010‎ Kam D. Dahlquist talk contribs‎ 11,541 bytes +19‎ →‎Sanity Check: Number of genes significantly changed and compare individual genes with known data: separated sections
• curprev 21:0421:04, 12 April 2010‎ Kam D. Dahlquist talk contribs‎ 11,522 bytes +3,390‎ pasted in sanity check from fall 2009 BiolDB wiki
• curprev 21:0121:01, 12 April 2010‎ Kam D. Dahlquist talk contribs‎ 8,132 bytes +7,773‎ pasted in Vibrio analysis from Fall 2009 BiolDB wiki
• curprev 20:5820:58, 12 April 2010‎ Kam D. Dahlquist talk contribs‎ 359 bytes +262‎ opening sentence
• curprev 20:5720:57, 12 April 2010‎ Kam D. Dahlquist talk contribs‎ 97 bytes +97‎ pasted in template