BISC 219/F10: Lab 3

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== Lab 3: Linkage Testing ==
== Lab 3: Linkage Testing ==
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You will determine on which of the five autosomes (linkage groups) your mutation is located. This task is a prerequisite to mapping. It is accomplished by determining the segregation behavior of your unmapped mutation relative to standard reference markers (e.g., mutations whose location is already known). Recall that unlinked mutations will segregate independently (your basic dihybrid inheritance as first observed by Gregor Mendel) whereas linked mutations will not.  
+
You will determine on which of the five autosomes (linkage groups) your mutation is located. This task is a prerequisite to mapping. It is accomplished by determining the segregation behavior of your unmapped mutation relative to standard reference markers (e.g., mutations whose locations are already known). Recall that unlinked mutations will segregate independently (your basic dihybrid inheritance as first observed by Gregor Mendel) whereas linked mutations will not.  
In practice, linkage tests are performed using the following steps (where "d" (''dpy'') represents your recessive mutant tested with reference marker "u" (''unc'')). The markers d and u must be visually distinguishable. Since homozygous mutant males usually will not mate, the desired double heterozygote is constructed by mating males heterozygous for your dpy mutation but wild type for all other genes including the reference mutation (d/+;+/+) with hermaphrodites homozygous for the reference mutation unc(+/+; u/u). The genotypes of the F1 hybrids will be (+/d;u/+) and (+/+;u/+). We are only interested in the double heterozygote (+/d;u/+). The F1 hybrids containing only u are not useful. To select the (+/d;u/+) heterozygotes, we let 4 to 5 individual F1's self fertilize on their own individual plates (one on each plate). We score the progeny of the F1 individuals (the F2) for linkage. Only F1 worms which produce d/d homozygotes are scored, since those are the (+/d;u/+). This should be 50% of the plates.  
In practice, linkage tests are performed using the following steps (where "d" (''dpy'') represents your recessive mutant tested with reference marker "u" (''unc'')). The markers d and u must be visually distinguishable. Since homozygous mutant males usually will not mate, the desired double heterozygote is constructed by mating males heterozygous for your dpy mutation but wild type for all other genes including the reference mutation (d/+;+/+) with hermaphrodites homozygous for the reference mutation unc(+/+; u/u). The genotypes of the F1 hybrids will be (+/d;u/+) and (+/+;u/+). We are only interested in the double heterozygote (+/d;u/+). The F1 hybrids containing only u are not useful. To select the (+/d;u/+) heterozygotes, we let 4 to 5 individual F1's self fertilize on their own individual plates (one on each plate). We score the progeny of the F1 individuals (the F2) for linkage. Only F1 worms which produce d/d homozygotes are scored, since those are the (+/d;u/+). This should be 50% of the plates.  
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'''To Do Today:'''
'''To Do Today:'''
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#.For linkage testing set up four different crosses. Each cross will contain 3 heterozygous males (d/+) from the cross you initiated using your mutant Dpy worms. Make sure that these are the only animals that you transfer from that plate by transferring the males to a transfer plate and letting them crawl around for a minute - away from any contaminating worms - then pick a second time to the mating plate.  
+
#For linkage testing set up four different crosses. Each cross will contain 3 heterozygous males (d/+) from the cross you initiated using your mutant Dpy worms. Make sure that these are the only animals that you transfer from that plate by transferring the males to a transfer plate and letting them crawl around for a minute - away from any contaminating worms - then pick a second time to the mating plate.  
#Each heterozygous (d/+) male will be mated to three L4 hermaphrodites that are homozygous for one of 4 known Unc (u/u) mutations on a mating plate. The strains and their reference mutations are:  
#Each heterozygous (d/+) male will be mated to three L4 hermaphrodites that are homozygous for one of 4 known Unc (u/u) mutations on a mating plate. The strains and their reference mutations are:  
#Label your four plates with your PURPLE Sharpie. With the genotype of the strain - for example: unc-13/unc-13; +/+ (H) X +/+; d/+ (M) with your initials and date.  
#Label your four plates with your PURPLE Sharpie. With the genotype of the strain - for example: unc-13/unc-13; +/+ (H) X +/+; d/+ (M) with your initials and date.  
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'''3-4 days after lab:'''
'''3-4 days after lab:'''
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#For linkage testing, transfer 2 wild type cross progeny that are L4 stage (heterozygous for both traits) hermaphrodites from each of your 4 crosses to each of 2 new plates per cross for a total of 8 plates.  
+
#For linkage testing, transfer 2 wild type cross progeny (heterozygous for both traits) that are L4 stage hermaphrodites from each of your 4 crosses to each of 2 new plates per cross for a total of 8 plates.  
#Label your 8 (4 sets of duplicates) plates with your PURPLE Sharpie. Label each plate with your initials, the genotype of your worms and the date. In each case, why is it important that you transfer L4’s and not adults? What is the genotype and phenotype of your expected F2 progeny?
#Label your 8 (4 sets of duplicates) plates with your PURPLE Sharpie. Label each plate with your initials, the genotype of your worms and the date. In each case, why is it important that you transfer L4’s and not adults? What is the genotype and phenotype of your expected F2 progeny?
#Incubate all worms at 23°C until the next lab period.
#Incubate all worms at 23°C until the next lab period.

Revision as of 12:02, 28 July 2010

Lab 2: Gene Mapping
Lab 4: Linkage Test Part 2 and Mapping
Lab 5: Mapping Part 2
Lab 6: Score


Lab 3: Linkage Testing

You will determine on which of the five autosomes (linkage groups) your mutation is located. This task is a prerequisite to mapping. It is accomplished by determining the segregation behavior of your unmapped mutation relative to standard reference markers (e.g., mutations whose locations are already known). Recall that unlinked mutations will segregate independently (your basic dihybrid inheritance as first observed by Gregor Mendel) whereas linked mutations will not.

In practice, linkage tests are performed using the following steps (where "d" (dpy) represents your recessive mutant tested with reference marker "u" (unc)). The markers d and u must be visually distinguishable. Since homozygous mutant males usually will not mate, the desired double heterozygote is constructed by mating males heterozygous for your dpy mutation but wild type for all other genes including the reference mutation (d/+;+/+) with hermaphrodites homozygous for the reference mutation unc(+/+; u/u). The genotypes of the F1 hybrids will be (+/d;u/+) and (+/+;u/+). We are only interested in the double heterozygote (+/d;u/+). The F1 hybrids containing only u are not useful. To select the (+/d;u/+) heterozygotes, we let 4 to 5 individual F1's self fertilize on their own individual plates (one on each plate). We score the progeny of the F1 individuals (the F2) for linkage. Only F1 worms which produce d/d homozygotes are scored, since those are the (+/d;u/+). This should be 50% of the plates.

F2 progeny of each class are counted in the (+/d;u/+) plates: wild-type (+/+;+/+); d (d/d;+/+); u (+/+;u/u) and du double (d/d;u/u). If assortment is independent, progeny will be: 9/16 wild type; 3/16 d, 3/16 u; 1/16 du (that is the 9:3:3:1 ratio)!

On the other hand, if the markers are closely linked double homozygotes (d u/d u) would occur only through a very rare recombination event, and thus you are not likely to observe the double mutant class.

To Do Today:

  1. For linkage testing set up four different crosses. Each cross will contain 3 heterozygous males (d/+) from the cross you initiated using your mutant Dpy worms. Make sure that these are the only animals that you transfer from that plate by transferring the males to a transfer plate and letting them crawl around for a minute - away from any contaminating worms - then pick a second time to the mating plate.
  2. Each heterozygous (d/+) male will be mated to three L4 hermaphrodites that are homozygous for one of 4 known Unc (u/u) mutations on a mating plate. The strains and their reference mutations are:
  3. Label your four plates with your PURPLE Sharpie. With the genotype of the strain - for example: unc-13/unc-13; +/+ (H) X +/+; d/+ (M) with your initials and date.
  4. Incubate all of the worms at 23°C for 3 days in your team's worm box.


3-4 days after lab:

  1. For linkage testing, transfer 2 wild type cross progeny (heterozygous for both traits) that are L4 stage hermaphrodites from each of your 4 crosses to each of 2 new plates per cross for a total of 8 plates.
  2. Label your 8 (4 sets of duplicates) plates with your PURPLE Sharpie. Label each plate with your initials, the genotype of your worms and the date. In each case, why is it important that you transfer L4’s and not adults? What is the genotype and phenotype of your expected F2 progeny?
  3. Incubate all worms at 23°C until the next lab period.
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