BME100 f2013:W900 Group1 L4: Difference between revisions

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{| {{table}}
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| Positive Control (PC0) || Patient ID 67618 (PC1) || Patient ID 67618 (PC2) || Patient ID 67618 (PC3)
| Positive Control (PC0) || Patient ID 67618 Replicate 1 (PC1) || Patient ID 67618 Replicate 2 (PC2) || Patient ID 67618 Replicate 3 (PC3)
|-
|-
| Negative Control (NC0) || Patient ID 78379 (NC1) || Patient ID 78379 (NC2) || Patient ID 78379 (NC3)
| Negative Control (NC0) || Patient ID 78379 Replicate 1 (NC1) || Patient ID 78379 Replicate 2 (NC2) || Patient ID 78379 Replicate 3 (NC3)
|}
|}




'''DNA Sample Set-up Procedure'''
'''DNA Sample Set-up Procedure'''
# Step 1.  
# Step 1. Label the tubes.
# Step 2.
# Step 2. Add PCR reaction mix to test tubes.
# Step 3.
# Step 3. Add DNA/Primer mix to the test tubes.





Revision as of 10:44, 23 October 2013

BME 100 Fall 2013 Home
People
Lab Write-Up 1 | Lab Write-Up 2 | Lab Write-Up 3
Lab Write-Up 4 | Lab Write-Up 5 | Lab Write-Up 6
Course Logistics For Instructors
Photos
Wiki Editing Help


OUR TEAM

Name: Neema Jamali
Name: Kaitlyn Allen
Name: Riddhi Rohit
Name: student
Role(s)
Name: student
Role(s)
Name: student
Role(s)

LAB 1 WRITE-UP

Initial Machine Testing

The Original Design
(Add image of the full OpenPCR machine here, from the Week 9 exercise. Write a paragraph description for visitors who have no idea what this is)


Experimenting With the Connections

When we unplugged (part 3) from (part 6), the machine ... (did what? fill in your answer)

When we unplugged the white wire that connects (part 6) to (part 2), the machine ... (did what? fill in your answer)


Test Run

(Write the date you first tested Open PCR and your experience(s) with the machine)




Protocols

Thermal Cycler Program


DNA Sample Set-up

Positive Control (PC0) Patient ID 67618 Replicate 1 (PC1) Patient ID 67618 Replicate 2 (PC2) Patient ID 67618 Replicate 3 (PC3)
Negative Control (NC0) Patient ID 78379 Replicate 1 (NC1) Patient ID 78379 Replicate 2 (NC2) Patient ID 78379 Replicate 3 (NC3)


DNA Sample Set-up Procedure

  1. Step 1. Label the tubes.
  2. Step 2. Add PCR reaction mix to test tubes.
  3. Step 3. Add DNA/Primer mix to the test tubes.


PCR Reaction Mix

  • What is in the PCR reaction mix?

PCR reaction, 8 tubes, 50 μL each: Mix contains Taq DNA polymerase, MgCl2, and dNTP's.


DNA/ primer mix

  • What is in the DNA/ primer mix?

DNA/ primer mix, 8 tubes, 50 μL each: Each mix contains a different template DNA. All tubes have the same forward primer and reverse primer.




Research and Development

PCR - The Underlying Technology

(Add a write-up, essay-style, organized into paragrpahs with descriptive headers, based on the Q&A's from Section three of your worksheet)

(BONUS points: Use a program like Powerpoint, Word, Illustrator, Microsoft Paint, etc. to illustrate how primers bind to the cancer DNA template, and how Taq polymerases amplify the DNA. Screen-captures from the PCR video/ tutorial might be useful. Be sure to credit the sources if you borrow images.)