BME100 f2013:W900 Group5 L5: Difference between revisions

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| [[Image:1234080_664420600235823_1448686718_n.jpg|100px|thumb|Name: Lincoln(Grady) Bain]]
| [[Image:1234080_664420600235823_1448686718_n.jpg|100px|thumb|Name: Lincoln(Grady) Bain]]
| [[Image:AndrewOlson.png|100px|thumb|Name: Andrew Olson]]
| [[Image:AndrewOlson.png|100px|thumb|Name: Andrew Olson]]
| [[Name: Pedro Giorge]]  
| [[[[Image:Pedro.jpg]]Name: Pedro Giorge]]  
| [[Image: Niko_mid_shot_edited1.jpg|100px|thumb|Name: Niko Vlastos]]
| [[Image: Niko_mid_shot_edited1.jpg|100px|thumb|Name: Niko Vlastos]]
| [[Image:BME103student.jpg|100px|thumb|Name: Omar Alsubhi]]
| [[Image:BME103student.jpg|100px|thumb|Name: Omar Alsubhi]]

Revision as of 11:32, 6 November 2013

BME 100 Fall 2013 Home
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Lab Write-Up 1 | Lab Write-Up 2 | Lab Write-Up 3
Lab Write-Up 4 | Lab Write-Up 5 | Lab Write-Up 6
Course Logistics For Instructors
Photos
Wiki Editing Help

OUR TEAM

Name: Lincoln(Grady) Bain
Name: Andrew Olson
[[Name: Pedro Giorge]]
Name: Niko Vlastos
Name: Omar Alsubhi

LAB 5 WRITE-UP

Background Information

We had 6 different DNA's that we have to mix with the Green Syper, then observe the change of color while mixing them with the Green Syper with each DNA sapritly. The color was changing to green gradually.

Single-Drop Fluorimeter
[Instructions: A description of the single-drop fluorimeter device. Add a PHOTO for bonus points]


How the Fluorescence Technique Works
[Instructions: In your own words]



Procedure

Smart Phone Camera Settings

  • Type of Smartphone: Samsung Galaxy series 4
    • Flash:off
    • ISO setting:auto
    • White Balance: auto
    • Exposure:0
    • Saturation:auto
    • Contrast:auto

[Instructions: If you used an additional phone, describe the other type of smart phone you used and how you adjusted the camera settings, if applicable. If not, delete this part]

  • Type of Smartphone:
    • Flash:
    • ISO setting:
    • White Balance:
    • Exposure:
    • Saturation:
    • Contrast:


Calibration

[Instructions: Describe how to set up your camera in front of the fluorimeter. Add a PHOTO of this set-up for bonus points.]

  • Distance between the smart phone cradle and drop =

[Instructions: See worksheet page 6.]


Solutions Used for Calibration [Instructions: See worksheet page 6.]

Calf thymus DNA solution concentration (microg/mL) Volume of the 2x DNA solution (uL) volume of the SYBR GREEN i Dye solution (uL) final DNA concentrationin SYBR Green i assay (ng/mL
5 80 80 2.5
2 80 80 1
1 80 80 0.5
0.5 80 80 0.25
0.25 80 80 0.125
0 80 80 blank

[Add more rows as needed]


Placing Samples onto the Fluorimeter

  1. [Instructions: Step one, in your OWN words]
  2. [Instructions: Step two, in your own words]
  3. [Instructions: Step three, in your own words]
  4. [Instructions: Step etc., in your own words]


Data Analysis

Representative Images of Samples

[Instructions: Show an IMAGE where you drew a circle around the droplet with the freehand tool for a sample with no DNA]

[Instructions: Show an IMAGE where you drew a circle around the droplet with the freehand tool for a sample with DNA (positive signal)]


Image J Values for All Samples

[Instructions: See worksheet page 8. To save time on typing a new Wiki table from scratch, use THIS TOOL to auto-generate a Wiki table: Excel-to-Wiki Converter. Copy the headers and values from the Excel spreadsheet you made, paste them into the form field, click submit, copy the Wiki code that the tool generated, and replace TABLE GOES HERE (below) with your auto-generated code.]


TABLE GOES HERE


Fitting a Straight Line

[Instructions: Place an IMAGE of your Excel plot with a line of best fit here. See worksheet page 9]