BME103:T130 Group 2: Difference between revisions

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'''The Original Design'''<br>
'''The Original Design'''<br>
[[Media:Open PCR Group 2.png]]
[[Media:Open_PCR_Group_2.png]]





Revision as of 15:55, 1 November 2012

BME 103 Fall 2012 Home
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Lab Write-Up 1
Lab Write-Up 2
Lab Write-Up 3
Course Logistics For Instructors
Photos
Wiki Editing Help

OUR TEAM

Name: Alexandra Brunelle
Research and Development Specialist
Name: Charul Singh
Experimental Protocol Planner
Name: Alex Hoffmann
Experimental Protocol Planner
Name: AJ Ciferno
Open PCR Machine Engineer
Name: Haley Gjertsen
Research and Development Specialist
Name: student
Role(s)

LAB 1 WRITE-UP

Initial Machine Testing

The Original Design
Media:Open_PCR_Group_2.png


Experimenting With the Connections

When we unplugged (part 3) from (part 6), the machine ... (did what? fill in your answer)

When we unplugged the white wire that connects (part 6) to (part 2), the machine ... (did what? fill in your answer)


Test Run

(Write the date you first tested Open PCR and your experience(s) with the machine)




Protocols

Polymerase Chain Reaction

Reagent Volume
Template DNA (20 ng) 0.2 µL
10 µM forward primer 1.0 µL
10 µM reverse primer 1.0 µL
GoTaq master mix 50.0 µL
dH20 47.8µL
Total Volume 100.0 µL



Sample Descriptions

Sample 1: Positive Control (contains cancer DNA template), Tube label: P
Sample 2: Negative Control (no DNA template), Tube label: N

Patient 1 ID 74013, Male, Age 55
Sample 3: Patient 74013, Replicate 1. Tube label M1
Sample 4: Patient 74013, Replicate 2. Tube label M2
Sample 5: Patient 74013, Replicate 3. Tube label M3

Patient 2 ID: 72825, Female, Age 55
Sample 6: Patient 72825, Replicate 1. Tube label F1
Sample 7: Patient 72825, Replicate 2, Tube label F2
Sample 8: Patient 72825, Replicate 3, Tube label F3





Flourimeter Measurements

(Add your work from Week 3, Part 2 here)




Research and Development

Specific Cancer Marker Detection - The Underlying Technology

(Add a write-up of the information discussed in Week 3's class)

(BONUS points: Use a program like Powerpoint, Word, Illustrator, Microsoft Paint, etc. to illustrate how primers bind to the cancer DNA template, and how Taq polymerases amplify the DNA. Screen-captures from the OpenPCR tutorial might be useful. Be sure to credit the source if you borrow images.)




Results

(Your group will add the results of your Fluorimeter measurements from Week 4 here)