BME103:T930 Group 3 l2: Difference between revisions

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<!--- Place your two tables "Supplied in the kit" and "Supplied by User" here --->
<!--- Place your two tables "Supplied in the kit" and "Supplied by User" here --->
 
{| class="wikitable" border="1 px"
|-
! Supplied in the kit !! Amount
|-
| Open PCR Machine || 1
|-
| Template DNA (20 ng) || 0.2 μL
|-
| 10 μM forward primer ||1.0 μL
|-
| 10 μM reverse primer || 1.0 μL
|-
| GoTaq master mix || 50.0 μL
|-
| dH<sub>2</sub>O || 47.8 μL
|-
| <strong>Total Volume</strong> || 100.0 μL
|}


'''PCR Protocol'''
'''PCR Protocol'''
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'''DNA Measurement Protocol'''
'''DNA Measurement Protocol'''


==Research and Development==
==Research and Development==

Revision as of 14:09, 28 November 2012

BME 103 Fall 2012 Home
People
Lab Write-Up 1
Lab Write-Up 2
Lab Write-Up 3
Course Logistics For Instructors
Photos
Wiki Editing Help

OUR TEAM

Name: Lekha Anantuni
Role: R&D
Name: Rohan Kumar
Role(s)
Name: Kyle Stoneking
Role(s)
Name: Austin Cuaderno
Role(s)
Name: Josh Eger
Role(s)

LAB 2 WRITE-UP

Thermal Cycler Engineering

Our re-design is based upon the Open PCR system originally designed by Josh Perfetto and Tito Jankowski.


System Design


Key Features


Instructions





Protocols

Materials

Supplied in the kit Amount
Open PCR Machine 1
Template DNA (20 ng) 0.2 μL
10 μM forward primer 1.0 μL
10 μM reverse primer 1.0 μL
GoTaq master mix 50.0 μL
dH2O 47.8 μL
Total Volume 100.0 μL

PCR Protocol



DNA Measurement Protocol

Research and Development

Background on Disease Markers

1.) The amyloid Beta precursor protein for Alzheimer's -
rs63751263 (http://omim.org/entry/104760#0008)
AGACGGAGGAGATCTCTGAAGTGAAG [A/C] TGGATGCAGAATTCCGACATGACTC

2.) Ubiquitin-like Modifier-activating enzyme for Spinal muscular atrophy -
rs80356547(http://omim.org/entry/314370#0002)
GATGGCGTGGCCAATGCCCTGGACAA [C/T] GTCCATGCCCGTCAGTTTGGAGGCG

Primer Design

1.) Forward primer: CTTC[G]ACCT
Reverse primer: TCCA[G]CTTC

2.) Forward primer: TGTT[A]CAGG
Reverse primer: GGAC[A]TTGT


Illustration

Exponential amplification of a specific gene.